Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02601 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATTTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGATACCTTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAATTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCACTCCAACATCTCCAAGGAAGCAAGGACTATCAAAACCAAATGAAAGTAAAGTATTATCATTGGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGTATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 558 0.4014 MGGCCCSARKPNLQGAPVYYYCPPTFEERESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETISSFETLITREDVEESNCKAQTNSTPTSPRKQGLSKPNESKVLSLEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02601 185 SUPERFAMILY RING/U-box 133 183 - -
Phco3g02601 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 184 - -
Phco3g02601 185 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Phco3g02601 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Phco3g02601 185 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Phco3g02601 185 MobiDBLite consensus disorder prediction 102 129 - -
Phco3g02601 185 Pfam Ring finger domain 138 179 IPR001841 -
Phco3g02601 185 MobiDBLite consensus disorder prediction 106 127 - -
Phco3g02601 185 SMART ring_2 139 179 IPR001841 -
Phco3g02601 185 CDD RING-H2_AIRP1-like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02601 Phco-Chr3 52636468 52638954 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02601 3 52636468 52638954 Phco3g02601 3 52636468 52638954 ECH
Phco3g02601 3 52636468 52638954 Phco1g00758 1 6961335 6963689 PCT