Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02545 ATGTCATTCCTCCAATCATCCAATTCAATCACTGTAATGGCGAAGGAAGAAGTGTTTGAGTTTCTCGGGAACGTTCCTCTGCTACAGAGGCTTCCTGGCTCGTCTGTACGGAAGATATCTGAGCTTGTAATTCCCAAATATTATGAGCCGAGAGAATATGTTGTTCGTGAGGGAGAACGTGGGGATGGTTTCTACTTCATCTGGGAAGGAGAGGCTGAGGTTGTTGGCTCTGTTAATGCTGACGATGATAATCATCCAGAGTTTCAATTGAAAAGATATGACTACTTTGGTTTTGGGTTATCAAATGAAGTTCACCGTGCTGATGTCATAGCTTTGACGAAGCTATCATGCTTGGTACTGCCCCATGAGCATTCAGCATTGCTGCAATCGAACTCTATCTGGAGTGCAGAAAAATCGGTTGATACATGCTCACTTGTGGAGCATATACTGCATTTGGAACCTATAGAGGTAGATATCTTCCGAGGAATCACTCCTCCAGATGCTCCAAAATTTGGAAAAGTATTTGGTGGACAAATTGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACATACCCATTATATATCAAGTTAGCCGTGTCCGTGATGGGAAGAGTTTTGCTACTAGGAAAGTGGATGCAATTCAAAAGGGAAACGTCATATTCACTTTGCTGGCTTCATTTCATAAGGAAGAATTGGGGTTTCAGCACCAGGAAGTGTCTATCCCATCAGTCCCTGCTCCAAATAAGCTTTTGTCGTTGGAAGAGCTTCGGGAGCTACGTCTTACCGACCCTCGCCTTCCAAGAACTTACCGGAACAAGGTTGCTACAGTTGAATTCATTCCGTGGCCAATAGAGATACGGTTCTGTGAACCTAGAGCTTCAACAAATCAGACCAAATCTCCCCCTAGTTTGAGATACTGGTTCAGAGCAAGGGGAAAACTTTCAGATGATCAGGCCTTGCACAGGTGTGTGGTAGCATACACTTCAGATCTAATCTTTCTTCAAGTGAGTTTGAATCCCAACCGTAGGTTGGGCATGAAGGCACGCGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCCGATGACTGGGTGCTATTTGTGATCTTCAGTCCTACTTCCTGTAATGCCCGTGGCTATGTTACTGGCGAAATGTTCAATCAAAAGGGAGAGCTTCTTGTATCAGTGGTTCAAGAAGGTCTAATGAGGGAAGTTATTTCTCCAAATTCAGACGTCAAATCTAAACTGTAA 1326 0.4382 MSFLQSSNSITVMAKEEVFEFLGNVPLLQRLPGSSVRKISELVIPKYYEPREYVVREGERGDGFYFIWEGEAEVVGSVNADDDNHPEFQLKRYDYFGFGLSNEVHRADVIALTKLSCLVLPHEHSALLQSNSIWSAEKSVDTCSLVEHILHLEPIEVDIFRGITPPDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPIIYQVSRVRDGKSFATRKVDAIQKGNVIFTLLASFHKEELGFQHQEVSIPSVPAPNKLLSLEELRELRLTDPRLPRTYRNKVATVEFIPWPIEIRFCEPRASTNQTKSPPSLRYWFRARGKLSDDQALHRCVVAYTSDLIFLQVSLNPNRRLGMKARAVSLDHSMWFHRPLRADDWVLFVIFSPTSCNARGYVTGEMFNQKGELLVSVVQEGLMREVISPNSDVKSKL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02545 441 Pfam Thioesterase-like superfamily 172 427 - -
Phco3g02545 441 PANTHER ACYL-COA THIOESTERASE 131 428 IPR003703 GO:0006637|GO:0047617
Phco3g02545 441 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 54 70 IPR018488 -
Phco3g02545 441 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 260 428 IPR029069 -
Phco3g02545 441 CDD Thioesterase_II_repeat2 158 250 - -
Phco3g02545 441 Pfam Cyclic nucleotide-binding domain 46 124 IPR000595 -
Phco3g02545 441 SMART cnmp_10 27 144 IPR000595 -
Phco3g02545 441 Gene3D - 141 430 IPR042171 -
Phco3g02545 441 CDD Thioesterase_II_repeat1 325 427 - -
Phco3g02545 441 NCBIfam acyl-CoA thioesterase II 150 428 IPR003703 GO:0006637|GO:0047617
Phco3g02545 441 CDD CAP_ED 27 131 IPR000595 -
Phco3g02545 441 Gene3D Jelly Rolls 10 138 IPR014710 -
Phco3g02545 441 ProSiteProfiles cAMP/cGMP binding motif profile. 27 97 IPR000595 -
Phco3g02545 441 FunFam Acyl-CoA thioesterase II 13 136 - -
Phco3g02545 441 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 145 252 IPR029069 -
Phco3g02545 441 FunFam Acyl-CoA thioesterase II 141 431 - -
Phco3g02545 441 SUPERFAMILY cAMP-binding domain-like 16 124 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02545 Phco-Chr3 52077793 52089564 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02545 3 52077793 52089564 Phco3g02545 3 52077793 52089564 ECH
Phco3g02545 3 52077793 52089564 Phco1g00783 1 7257357 7267426 PCT