Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00783 ATGGAGAACGAGAAAGCGTTTGAGTTTCTCGGACGCGTTCCTCTTCTGCAGAGGCTTCCGAGCTCGTCTGTGAGGAAGATATCTCAACTTGTGGATGTCAAAAGCTGTGAGCCGGGAGAGTATGTTGTTCGCGAGGGTGAACATGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCTGAGGTTGTGGGATCCGTTAGTGCCAATGATGAAAATCGCCCAGAGTTCCAGTTGAAAAGATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCAGGCAGGTGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTTCCCCAAGAGCATTCAACACTGCTGCAGCCAAAATCTATCTGGAGAGCCAAAAATTGCGTCGAGACATGCTCACCTGTAGAGAATATATTGCATTTAGAACCTTTGGAGGTAGATATCTTCCAAGGAATTACTCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATCGGACAGGGACTGGCCGCAGCATCAAAATCTGTTGACTGTCTAAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGAGATTTAGAAATGCCAATTACATATAAAGTTTATCGTATCCGTGATGGGAGGAGCTTTGCTACAAGGAAAGTAGATGGAATTCAAAAGGGAATTGTCATATTCACTCTGTTGGCTTCATTTCAAAAGGAAGAACTGGGGATGGTTCACCAGAAAGTATCTATACCATCTGTCCCCCCTCCAGATAAGCTTCTGCCAATGGAAGAGCTACGGGAGAGACGTCTTACTGACCCTCGTTTACCAGTAACCTACCGGAACAAAGTAGCTACATCTCAATTCATCCCCTGGCCCATAGAGATACGACTATGTGAATATGAAATTTCAACAAATATGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCGGATGATCAAGCGTTGCATAGGTGCGTGGTGGCATTTGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGATTTCAGGACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCACCGATCTGTAAAAGCTGATGATTGGGTGCTATTTGCGATCTTTACTCCTAGTGCCCATAGTGCACGCGTCTTTGTAACCGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTCGTATCATTGGTTCAAGAAGGACTAGCCAGGAAAATTAATCAACGAAATTCAGCCATTAAATCCAAGTTGTGA 1290 0.4411 MENEKAFEFLGRVPLLQRLPSSSVRKISQLVDVKSCEPGEYVVREGEHGDGVYFILDGEAEVVGSVSANDENRPEFQLKRYDYFGYGLSNTVHQAGVVALSKLTCLVLPQEHSTLLQPKSIWRAKNCVETCSPVENILHLEPLEVDIFQGITLPDAPRFGKVFGGQMIGQGLAAASKSVDCLKVVHSLHAYFILAGDLEMPITYKVYRIRDGRSFATRKVDGIQKGIVIFTLLASFQKEELGMVHQKVSIPSVPPPDKLLPMEELRERRLTDPRLPVTYRNKVATSQFIPWPIEIRLCEYEISTNMTKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFLQVSLNPHREKDFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPSAHSARVFVTGQMFNQKGELLVSLVQEGLARKINQRNSAIKSKL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00783 429 Gene3D - 128 418 IPR042171 -
Phco1g00783 429 CDD Thioesterase_II_repeat1 313 414 - -
Phco1g00783 429 CDD CAP_ED 15 112 IPR000595 -
Phco1g00783 429 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Phco1g00783 429 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Phco1g00783 429 CDD Thioesterase_II_repeat2 146 238 - -
Phco1g00783 429 FunFam Acyl-CoA thioesterase II 1 124 - -
Phco1g00783 429 Pfam Thioesterase-like superfamily 161 414 - -
Phco1g00783 429 PANTHER ACYL-COA THIOESTERASE 112 419 IPR003703 GO:0006637|GO:0047617
Phco1g00783 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 417 IPR029069 -
Phco1g00783 429 FunFam Acyl-CoA thioesterase II 129 419 - -
Phco1g00783 429 SMART cnmp_10 15 132 IPR000595 -
Phco1g00783 429 Gene3D Jelly Rolls 1 126 IPR014710 -
Phco1g00783 429 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Phco1g00783 429 SUPERFAMILY cAMP-binding domain-like 6 112 IPR018490 -
Phco1g00783 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 130 240 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00783 Phco-Chr1 7257357 7267426 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00783 1 7257357 7267426 Phco1g00783 1 7257357 7267426 ECH
Phco3g02545 3 52077793 52089564 Phco1g00783 1 7257357 7267426 PCT