Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02542 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATTCCTGGATCTGGAGCACAACCTGAGTTACATATGTCACCTAATATTCGACCACTCTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTAGTGGTTCCATTGGATCCACATTGCCATTAGAGTCTTCTTCAATTTCGGCTCATGGTGTCAATATGGGAGCTCCTCCTGGGGTACCCCCAGGGGAACCTGTTAAAAGGAAGAGGGGAAGGCCTAGGAAATATGGCACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTGGTCATCCTGGATCCTTGACACAGGGCCAGAAACGTGGCAGAGGGCGACCACCCGGGACTGGGAAAAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGTATTTTGTCAGCCAATGGCGCTGTCTCAACTGTCACACTTCGGCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGGTTCGAGATAGTGTGCCTGTCAGGCTCGTACTTGGTCACTGATAGTGGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTTCTCATTGCGTCAAGTCCTGTTCAGGTTGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCTCGGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAACCTTTCTCCAACCCCTTCATCTTTAAGTCCGTGGTCACAATCACGACCGTTGGATATGCGTAATTCCCATGTGGACATTGATTTGATGCGTGGGTGA 1026 0.4873 MDRGDQMALSGSYYMQQRGIPGSGAQPELHMSPNIRPLSNPNLPFQSSIGSGSIGSTLPLESSSISAHGVNMGAPPGVPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSGHPGSLTQGQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESSEGAEVAVESDHQGVHNPVALNSISPNQNLSPTPSSLSPWSQSRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02542 341 Gene3D - 154 296 - -
Phco3g02542 341 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Phco3g02542 341 MobiDBLite consensus disorder prediction 100 118 - -
Phco3g02542 341 CDD DUF296 153 267 IPR005175 -
Phco3g02542 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Phco3g02542 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Phco3g02542 341 MobiDBLite consensus disorder prediction 33 69 - -
Phco3g02542 341 MobiDBLite consensus disorder prediction 297 329 - -
Phco3g02542 341 MobiDBLite consensus disorder prediction 1 137 - -
Phco3g02542 341 MobiDBLite consensus disorder prediction 273 287 - -
Phco3g02542 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Phco3g02542 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Phco3g02542 341 MobiDBLite consensus disorder prediction 271 341 - -
Phco3g02542 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 315 IPR039605 GO:0003680
Phco3g02542 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02542 Phco-Chr3 52039002 52043631 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02542 3 52039002 52043631 Phco3g02542 3 52039002 52043631 ECH
Phco3g02542 3 52039002 52043631 Phco1g00793 1 7350340 7353995 PCT