Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00793 ATGGATCGAGGAGACCAAATGACATTATCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAACCTGAACTGCACAACTCGCCTCATATTCGACCACTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCTACATTACCATTGGAATCTTCAGGAATTTCATCTCCATGTGTCAATGTGAGTGTTCCTTCTGGTGCACTGGCTGTGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGGCCTGACGGAGCTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGTACAAGGCCAGAAACGAGGTAGAGGGCGTCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGCACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCACATCATTACCATAGCGGTTGGAGAAGATGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGGCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGACAGTGGCGGCGGCTCCCGCAACCGAACCGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATAGGTGGGGGAGTTGGTGGAGTGCTTATTGCTGCAACTCAAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATAAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGAGTGATCATCAGACAGTTCATAATCCAGTTGCAGTGAATAGCATCTCCCCAAATCAAAATCTTACTCCAAACTCATCTTTAAGTCCGTGGCCAGCATCACGACCATTGGACATGCGCAATTCTCATATTGACATTGATTTAATGCGCGGGTGA 1026 0.4747 MDRGDQMTLSGSASYYMQRGIPGAGTQPELHNSPHIRPLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPCVNVSVPSGALAVESVKRKRGRPRKYGPDGAVSLALTPTPASHPGALVQGQKRGRGRPPGSGKKQQLASLGALMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAATQVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIESDHQTVHNPVAVNSISPNQNLTPNSSLSPWPASRPLDMRNSHIDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00793 341 ProSiteProfiles PPC domain profile profile. 148 291 IPR005175 -
Phco1g00793 341 FunFam AT-hook motif nuclear-localized protein 1-like 154 286 - -
Phco1g00793 341 MobiDBLite consensus disorder prediction 18 57 - -
Phco1g00793 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 316 IPR039605 GO:0003680
Phco1g00793 341 MobiDBLite consensus disorder prediction 305 322 - -
Phco1g00793 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Phco1g00793 341 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Phco1g00793 341 MobiDBLite consensus disorder prediction 305 324 - -
Phco1g00793 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 269 IPR005175 -
Phco1g00793 341 MobiDBLite consensus disorder prediction 87 135 - -
Phco1g00793 341 CDD DUF296 153 268 IPR005175 -
Phco1g00793 341 Gene3D - 154 298 - -
Phco1g00793 341 MobiDBLite consensus disorder prediction 33 57 - -
Phco1g00793 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00793 Phco-Chr1 7350340 7353995 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00793 1 7350340 7353995 Phco1g00793 1 7350340 7353995 ECH
Phco3g02542 3 52039002 52043631 Phco1g00793 1 7350340 7353995 PCT