Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02521 ATGGGGGAGGAAGCAAAAAGGTATGCTGTTGTGACAGGAGCAAACAAAGGAATTGGTTTTGGTGTGTGTAAGAAGTTGGCTTCAAATGGGATTGTGGTGGTGCTAACAGCTAGAGATGAGGAGAGGGGTTTGAAAGCTGTTGAAACACTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAGCTTGATGTGGATGACCCTGCTAGTGTTGCTACCTTAGCTCATTTCATCAAAACTAAATTTGGGAAACTTGATATCTTGGTGAATAATGCAGCTGTTACTGGGGGTAAATTATTAGATGGTGACGCTTTACTTAGAAGGAGAAATGGTGAAAAAGTTGATTGGAGTGAAGTAGGGTATCAAACATATGAGTTAGCTGAACAGTGTGTGGAAACAAACTTCTATGGTGTGGAAAGGGTAACTGAAGCTCTTATTCCCCTTCTCCAGCTATCCACTTCACCAAGAATTATCAATATTTCCTCCAGAGCAGGGCTCTTGAAGAACATACCTAATGAGAGGGCTAGAACAGTGTTCAGTGACATTGAAAACCTTACAATAGAAAAAATAGATAGTGTACTGAAAGAGTTTCAGAAAGATTTCAAAGAGGGATCATTGGAAATCAAAGGTTGGCCAACTTTTGCTTCTGCTTATACAATGTCAAAAGCAGCTTTGAATGCTTACACAAGGATTATGGCCAAGAAAAATCCACATTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACAGATATGAACAACAACACTGGACTATTAAGCATTGATGAAGGTTCTGAAACTCCTGTAATGTTGGCACTGTTGCCAAATAATGTTCCTTCTGGTTGCTTCTTTTCTCAGGGTGAAGTAGTACCCTTTTGA 885 0.4011 MGEEAKRYAVVTGANKGIGFGVCKKLASNGIVVVLTARDEERGLKAVETLKEFGLSDLLVFHQLDVDDPASVATLAHFIKTKFGKLDILVNNAAVTGGKLLDGDALLRRRNGEKVDWSEVGYQTYELAEQCVETNFYGVERVTEALIPLLQLSTSPRIINISSRAGLLKNIPNERARTVFSDIENLTIEKIDSVLKEFQKDFKEGSLEIKGWPTFASAYTMSKAALNAYTRIMAKKNPHFHINSVCPGFVKTDMNNNTGLLSIDEGSETPVMLALLPNNVPSGCFFSQGEVVPF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02521 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Phco3g02521 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Phco3g02521 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Phco3g02521 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 291 - -
Phco3g02521 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 286 IPR036291 -
Phco3g02521 294 Gene3D - 3 294 - -
Phco3g02521 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 206 234 IPR020904 GO:0016491
Phco3g02521 294 Pfam Enoyl-(Acyl carrier protein) reductase 210 258 - -
Phco3g02521 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Phco3g02521 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Phco3g02521 294 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Phco3g02521 294 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Phco3g02521 294 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Phco3g02521 294 FunFam (+)-neomenthol dehydrogenase 2 294 - -
Phco3g02521 294 Pfam short chain dehydrogenase 8 169 IPR002347 -
Phco3g02521 294 CDD carb_red_PTCR-like_SDR_c 7 294 IPR045313 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02521 Phco-Chr3 51916872 51918694 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02521 3 51916872 51918694 Phco3g02521 3 51916872 51918694 ECH
Phco3g02521 3 51916872 51918694 Phco1g00816 1 7582519 7589196 PCT