Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00816 ATGAAGCACCAGTTTCAAACTGATGAGAACACTTTGATCCTTCCATTTTCAAATTTGTCACCACGACCACGCTTTCAAACTAATCGTTACGAGAGATGGAGTGAAGAAGAACACAGAAAAAGTATTTACGACGTCAAATTATCAGAAAACCAGAATGTTGCAATTCAGGAGCAAGTTCATGTGATTCCGGACCAAGTTCATGTGATTCCAGACCAAGTTCATGTGCAAAATGACGATGCTGTTTTTGCAGATCTTGAGGACTTGGGAACTGTAGCTAAAGAAGTTATGAAGCTAGAATTTGTCAAGAATCACTGTTATGAAAAAGATGTATATAGGTATGCAGTAGTGACAGGAGCTAACAAGGGGATAGGCTATGGAATATGCAAGAAACTGGCTTTGCATGGAGTTGTCGTGGTGCTAACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCAGTGGAAAGGTTGAAAGAGTTTAGCCTCTCAGACTCTGTGGTTTTTCATCAACTTGATGTCACAGACCCTTCCAGTGTTACTTCCTTGGCAGATTTCATCAAAACCAGATTTGGAAAACTTGATATATTGGTGAACAACGCAGGCGTTCCTGGGGGAATAGTAAATGGAGAGAATTATCTTAGAAGGAAAAAGGGTGAAATATTGGATTGGAATCTAATAGTGCATCAAAATTACGAGTTAGCCAAAGAATGTGTTGAAACAGACTTCTTTGGTTCAGAGAGAGTAACTGAAGCTCTTCTTCCTCTGCTCCAACTCTCCACTTCACCAAGAATTGTCAATATTTCTGGTCAAATAGGACTATTGAAGCACATACCAAATGAGTGGGCAAGAGGAGTTTTTGGTGACATTGAGAATCTCACAAATGAGAAACTTTATGAGGTACTTAGAGAGTTTCTGAAAGATTACAAAGAAGGATCATTAGAATCCAAGAATTGGCCACCTGTGGTTTCTGGTGTCACCATGGCAAAAGCAGGTATAAATGCCTACACAAGGATGCTAGCTAAGAAGTTCCCTCATTTTTGCATAAATTGTATATGCCCGGGCTCTGTCAAAACTGATATGAACCACAACCAAGGCTTGTTAAGCATTGATGAAGGTGTTGAAAATCCGGTTAGACTAGCATTGTTGCCTGATCATGGTCCTTCTGGCCTCTTTTTCTCAATTGATCAAGTGATTCCCTTTTGA 1197 0.3993 MKHQFQTDENTLILPFSNLSPRPRFQTNRYERWSEEEHRKSIYDVKLSENQNVAIQEQVHVIPDQVHVIPDQVHVQNDDAVFADLEDLGTVAKEVMKLEFVKNHCYEKDVYRYAVVTGANKGIGYGICKKLALHGVVVVLTARNEKRGLEAVERLKEFSLSDSVVFHQLDVTDPSSVTSLADFIKTRFGKLDILVNNAGVPGGIVNGENYLRRKKGEILDWNLIVHQNYELAKECVETDFFGSERVTEALLPLLQLSTSPRIVNISGQIGLLKHIPNEWARGVFGDIENLTNEKLYEVLREFLKDYKEGSLESKNWPPVVSGVTMAKAGINAYTRMLAKKFPHFCINCICPGSVKTDMNHNQGLLSIDEGVENPVRLALLPDHGPSGLFFSIDQVIPF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00816 398 Gene3D - 110 398 - -
Phco1g00816 398 PRINTS Glucose/ribitol dehydrogenase family signature 254 270 IPR002347 -
Phco1g00816 398 PRINTS Glucose/ribitol dehydrogenase family signature 323 342 IPR002347 -
Phco1g00816 398 PRINTS Glucose/ribitol dehydrogenase family signature 113 130 IPR002347 -
Phco1g00816 398 PRINTS Glucose/ribitol dehydrogenase family signature 189 200 IPR002347 -
Phco1g00816 398 PRINTS Glucose/ribitol dehydrogenase family signature 342 359 IPR002347 -
Phco1g00816 398 Pfam short chain dehydrogenase 113 272 IPR002347 -
Phco1g00816 398 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 260 268 IPR002347 -
Phco1g00816 398 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 200 IPR002347 -
Phco1g00816 398 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 323 342 IPR002347 -
Phco1g00816 398 CDD carb_red_PTCR-like_SDR_c 112 398 IPR045313 GO:0016616
Phco1g00816 398 FunFam (+)-neomenthol dehydrogenase 107 398 - -
Phco1g00816 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 112 384 IPR036291 -
Phco1g00816 398 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 112 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00816 Phco-Chr1 7582519 7589196 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00816 1 7582519 7589196 Phco1g00816 1 7582519 7589196 ECH
Phco3g02521 3 51916872 51918694 Phco1g00816 1 7582519 7589196 PCT
Phco1g00816 1 7582519 7589196 Phco3g02522 3 51920005 51922605 PCT