Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02446 ATGGCTTCTTCGGAAGCCGATTCCCGTCTGAAGCAGGTGCTCGTTCCCGCGCTCGAGAAAATCATCAAGAACGCGTCGTGGAGAAAGCACGCGAAGCTCGCGCATGAGTGCAAATCCGTGATCGAAACCCTAACCTCACCGCCGAAGCCTCAGTCGCCGGCCTCTGACGACGTCGCCGAGCCGGAGGCATCGGTCCCCGGCCCGATCCATGATGGCGGTCCAGTGGAGTACTCGCTCGCGGAGTCCGAGTCGATCCTCCGCCCGCTCATCGCCGCGGCGGCCTCCGGCGTCGTGAAGATCGCCGATCCTGCTGTCGACGCCGTGCAGCGACTCATTGCGCACGGATTCCTCCGCGGCGAGGCCGACTCCAGCGGCGGCGCGCCCGAGGCAAAGCTGCTCGCGAGCCTGATTGAGGCAGTGTGCAAGTGCCACGAATTCGTCGACGACGCCGTCGAATTGCTCGTGCTGAAGACGCTCTTGTCAGCAGTGACTTCGATTTCGCTGCGAATTCACGGTGATTGCTTGCTCTTGATCGTGAGAACTTGTTATGACATATACCTAGATAGTAAGAATTTGGTGAATCAGACGACGGCGAAAGCGTCGTTGATTCAAATGTTAGTGATTGTGTTTAGGAGGATGGAGGCGGATTCGTCCACGGTTCCGGTTCAGCCTATTGTTGTGGCTGAATTGATGGATCCTGTGGAGAAATCTGACGTGGATAACTCCATGACGCAGTCTGTACAGGGTTTTATCACCAGGATTGCGCAGGACATTGATGGAGTTTTGAATCCGGTGACGCCGTCAGCTTTGGGCGCACACGACGGTGCCTTTGAGACAACAGTGGCGGCAACGGTGGAGACTGCGAATCCAGCAGATTTGTTGGATTCCACTGACAAAGACATGTTGGATGCCAAGTATTGGGAGATCAGTATGTATAAGACAGCATTGGAGGGGAGGAAAGGGGAACTGGTAGATGGGGAGGTGGTGGAGAGGGACGATGATCTGGAGATTCAGATTGGGAATAAGCTCCGGAGAGATGCCTTTTTGGTGTTCAGGGCACTTTGTAAGTTGTCCATGAAGGCGCCGACGAAGGAGGCATCCGTTGACCCTCAGTTGATGAAGGGGAAGATTGTGGCCTTGGAGTTGTTGAAAATCTTGCTGGAGAATGCTGGAGCTGTCTTCAGGACTAGTGAAAGGTTTTTGGGTGCCATCAAGCAGTACTTATGTTTATCATTGTTGAAGAACAGTGCCTCAACTCTTTTGATCGTATTTCAGCTGTCTTGCTCCATCTTCATTAGTCTGGTATCAAGATTTAGAGCTGGACTGAAAGCAGAAATTGGAGTATTTTTCCCCATGATTGTTCTTAGGGTTCTAGAAAATGTTGCTCAACCTAATTTCCCGCAAAAGATGATTGTGCTTCGTTTTCTGGAGAAGCTATGTGATGATTCACAGATACTGGTGGACATTTTTATCAATTATGACTGCGATGTCAATTCAACAAACATATTTGAGAGGATGGTCAATGGACTCCTTAAAACTGCCCAAGGTGTCCCTCCTGGTGCAACAACCACAGTTTTGCCACCTCAAGAGGAAACACTAAAGCTTGAAGCCATGAAGTGCTTAGTTGCTGTCTTAAAATCGATGGGAGACTGGATGAACAAACAATTGCGCATTCCAGATCCTCTTTCAGGCAAAAAAGTTGAAGCAGTTGATAATGACCATGAAGCTGGACTTCCTCCCATTGCAAATGGGAATGGTGAAGAGCCAGTTGAAGGATTAGACACTCATTCTGAAATCTCCAGTGAGGCATCTGAGGTTTCAACCATTGAGCAACGTCGAGCTTATAAACTGAAACTTCAGGAAGGTATATCACTTTTTAACAGGAAGCCAAAGAAAGGAATTGAATTCCTCATCAATGCCAACAAAGTGGGTAATTCACCAGAGGAGATAGCAGCTTTTCTTAAAGATGCATCAGGGTTGAACAAGACTTTGATTGGTGATTATCTGGGAGAAAGGGAAGAATTGTCCTTGAAAGTAATGCATGCATATGTGGATTCTTTTGACTTTCAGGGGTTGGAGTTTGATGAGGCAATCAGGGCCTTTCTTCAAGGCTTTAGACTGCCTGGTGAGGCACAGAAAATTGATCGAATCATGGAAAAGTTTGCAGAACGATATTGCAAATGCAACCCAAAAGTCTTTTCTAGTGCTGATACAGCTTATGTCCTTGCATATTCTGTGATACTGCTTAACACGGATGCTCACAATCCTATGGTGAAAAACAAGATGTCGGCTGAAGATTTCATAAAAAATAATCGTGGCATAGATGATGGAAAAGATGTACCAGAAGAATACTTGAGGTCTTTGTATGAACGAATATCTAGAAATGAGATCAAAATGAAAGAAGTTGATTTCGAAACTCAGCAAATACAGGCTGTGAACTCTAACAGACTTTTAGGCTTGGATAGTATATTGAATATTGTGATCCGGAAGCGTGGGGAAGACAGTAATATGGAGACCAGTGATGATCTAATCCGACATATGCAAGAACAATTCAAAGAAAAAGCTCGCAAAACAGAGTCAGTCTATTATGCAGCAACTGATGTTGTAATCCTCAAATTCATGATTGAGGTCTGCTGGGCACCAATGTTAGCTGCCTTCAGTGTTCCTCTTGATCAAAGTGATGATGAATTTGTAATATCACTGTGTCTTGAAGGCTTTCGATTTGCTATTCATGTTACTTCTGTAATGTCCATGAAGACTCACAGAGATGCTTTTGTGACTTCATTAGCAAAGTTTACCTCCCTTCATTCTCCTGCTGATATTAAGCAGAAAAATGTAGATGCAATCAAGGTGATTGTTACTATTGCTGATGAGGATGGGAATTACTTACAAGAAGCTTGGGAGCATATCTTGACCTGTGTTTCCCGATTTGAACATCTACATCTTCTCGGAGAGGGGGCCCCACCAGATGCCACATTCTTTGCATTCCCTCAAAATGATTCTGAAAAAACAAAAGCAAAATCAACTATTCTTCCCGTTTTAAAGAAGAAGGGACCTGGAAGGATGCAATATGCAGCAGCCACAGTGATGCGGGGTTCATATGATAGCACTGGAATCGGCAGTAATACTTCTGGGGCCGTGACATCAGAACAGGTGAACAATCTAGTTTCTAATTTGAATATGTTGGAACAAGTCGGAAGCTCAGAAATGAATCGCATATACACTCGGAGTCAGAAGCTGAACAGCGAGGCCATAATAGATTTTGTCAAGGCTTTGTGCAAAGTCTCCATGGAGGAACTTAGATCTCCATCTGATCCACGGGTGTTCAGCCTTACAAAGATAGTTGAGATTGCGCACTATAATATGAACCGCATCAGGCTTGTGTGGTCAAGCATATGGCATGTTCTATCAGATTTCTTTGTAACCATTGGCTGTTCTGGGAACCTTTCAATTGCAATTTTTGCAATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTGGAGCGAGAGGAATTGGCTAATTATAATTTTCAAAATGAATTTATGAAGCCTTTTGTCATTGTTATGAGGAAGAGTAGTGCTGTTGAAATTAGAGAACTTATCATTAGATGTGTCTCTCAAATGGTTTTATCTCGGGTCAACAATGTAAAATCAGGATGGAAGAGCATGTTCATGGTATTCACAACAGCAGCATATGATGACCACAAAAATATTGTACTCCTGTCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCACACATCACTGAGACTGAAACCACCACATTTACAGATTGTGTTAATTGTCTAATTGCATTCACCAATAGTAGATTTAACAAAGAGATTAGCCTAAATGCCATTGCTTTCCTTCGATTCTGTGCAACAAAACTAGCAGCAGGAGACCTTGGATCTTCCTCAAGGAATAATGACAAGGAAACTTATGGAAAGATATCTACTCCTTCGCCTCGAACAGGAAAAGAGGGGAAACAAGAAAATGGAGAGGTGTCAGACAAAGAAGATCATCTCTATTTCTGGTTTCCTTTATTGGCTGGTTTGTCTGAACTTAGCTTTGACACAAGATCTGAAATAAGGCAAAGTGCCTTGAAAGTCCTGTTTGAAACCTTACGCAACCATGGCCACCTCTTTTCACTACCTTTATGGGAAAGAGTATTTGAATCAGTCCTATTTCCAATATTTGATTATGTTCGGCATGCTATTGATCCTTCTGGGAGTAGCTCAGAGGTCAATGAATTAGAGACTGAAGGTCAGCTTGATCAGGATGCATGGCTTTATGAGACATGCACACTAGCCCTCCAATTGGTAGTAGATCTTTTTGTCAACTTCTATAACACTGTCAATCCACTTTTAAGAAAGGTTTTGATGCTCCTGGTAAGCTTTATAAAACGCCCTCATCAAAGCCTAGCTGGCATTGGTATTGCTGCTTTTGTTCGTTTGATGAGTAATGCTGGGGAGCTATTTTCTGATGAGAAGTGGTTAGATGTGGTTTTTTCACTGAAAGAAGCAGCAAATGCAACACTCCCTAACTTTTCATTCCTTGATAGTGGAGACGTTATGACTGGAAATCATGAACAGACTTCATTGGCTGAAGATGACAGGGATCCTGCGGAGTCTGGCTCACATGATAATGTACAAAGCCTGAGGACTCAACATCTTTATGCACATTTATCTGATGCAAAGTGCCGAGCTGCTGTTCAGCTTTTATTGATCCAGGCGGTGATGGAGATCTATAACATGTACCGAACTCAGCTTTCAGCAAAAACCATACTAGTCTTGTTTGAGGCTTTACATGATGTGGCATTACATGCTCACAAGATTAACAGCAATATTATTTTACGTTCAAAATTACAAGAGTATGGCTCTATGACTCAAATGCAAGACCCTCCACTGCTACGCCTGGAAAATGAGTCCTACCAAATATGCCTCACATTTTTACAGAGCCTTGTTGTGGACACACCTCCTAATTATGAGGAGGTTGAAGTAGAGACACTTCTTGTTCAGCTTTGTAAGGAAGTCTTGGAGTTTTATGTTGAAGTTGCAGGTTCTGGAAAAGTATCTGAATCCTCTAATGGCAGACAGCTGCATTGGTTAGTTCCTCTGGGCTCTGGAAAGAGGAGAGAATTGGCTGCACGTGCACCGCTTGTTGTGGCCACTCTTCAAGGTATTTGTAATTTGGGAGATACATCTTTTGAGAAGAACCTGACTCATTTTTTCCCTCTTATCACAAGCTTGATAAGTTGCGAACATGGGTCAACTGAGGTTCAGGTAGCTCTGAGTGATATGCTTAGTTTATCAGTTGGTCCTCTTCTGCTACGCACATGTTAA 5349 0.4373 MASSEADSRLKQVLVPALEKIIKNASWRKHAKLAHECKSVIETLTSPPKPQSPASDDVAEPEASVPGPIHDGGPVEYSLAESESILRPLIAAAASGVVKIADPAVDAVQRLIAHGFLRGEADSSGGAPEAKLLASLIEAVCKCHEFVDDAVELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLDSKNLVNQTTAKASLIQMLVIVFRRMEADSSTVPVQPIVVAELMDPVEKSDVDNSMTQSVQGFITRIAQDIDGVLNPVTPSALGAHDGAFETTVAATVETANPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEVVERDDDLEIQIGNKLRRDAFLVFRALCKLSMKAPTKEASVDPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFPQKMIVLRFLEKLCDDSQILVDIFINYDCDVNSTNIFERMVNGLLKTAQGVPPGATTTVLPPQEETLKLEAMKCLVAVLKSMGDWMNKQLRIPDPLSGKKVEAVDNDHEAGLPPIANGNGEEPVEGLDTHSEISSEASEVSTIEQRRAYKLKLQEGISLFNRKPKKGIEFLINANKVGNSPEEIAAFLKDASGLNKTLIGDYLGEREELSLKVMHAYVDSFDFQGLEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFSSADTAYVLAYSVILLNTDAHNPMVKNKMSAEDFIKNNRGIDDGKDVPEEYLRSLYERISRNEIKMKEVDFETQQIQAVNSNRLLGLDSILNIVIRKRGEDSNMETSDDLIRHMQEQFKEKARKTESVYYAATDVVILKFMIEVCWAPMLAAFSVPLDQSDDEFVISLCLEGFRFAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKVIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKTKAKSTILPVLKKKGPGRMQYAAATVMRGSYDSTGIGSNTSGAVTSEQVNNLVSNLNMLEQVGSSEMNRIYTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLSFEIMEKIIRDYFPHITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAAGDLGSSSRNNDKETYGKISTPSPRTGKEGKQENGEVSDKEDHLYFWFPLLAGLSELSFDTRSEIRQSALKVLFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSSEVNELETEGQLDQDAWLYETCTLALQLVVDLFVNFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLDVVFSLKEAANATLPNFSFLDSGDVMTGNHEQTSLAEDDRDPAESGSHDNVQSLRTQHLYAHLSDAKCRAAVQLLLIQAVMEIYNMYRTQLSAKTILVLFEALHDVALHAHKINSNIILRSKLQEYGSMTQMQDPPLLRLENESYQICLTFLQSLVVDTPPNYEEVEVETLLVQLCKEVLEFYVEVAGSGKVSESSNGRQLHWLVPLGSGKRRELAARAPLVVATLQGICNLGDTSFEKNLTHFFPLITSLISCEHGSTEVQVALSDMLSLSVGPLLLRTC 1782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02446 1782 SUPERFAMILY Sec7 domain 612 806 IPR035999 GO:0005085|GO:0032012
Phco3g02446 1782 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 690 808 - -
Phco3g02446 1782 SUPERFAMILY ARM repeat 404 1511 IPR016024 -
Phco3g02446 1782 MobiDBLite consensus disorder prediction 43 72 - -
Phco3g02446 1782 Pfam Sec7 domain 616 797 IPR000904 GO:0005085|GO:0032012
Phco3g02446 1782 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 599 688 - -
Phco3g02446 1782 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Phco3g02446 1782 MobiDBLite consensus disorder prediction 1305 1337 - -
Phco3g02446 1782 SMART sec7_5 612 797 IPR000904 GO:0005085|GO:0032012
Phco3g02446 1782 Pfam C-terminal region of Mon2 protein 1346 1408 IPR032817 -
Phco3g02446 1782 Pfam BIG2 C-terminal domain 1573 1771 IPR046455 -
Phco3g02446 1782 MobiDBLite consensus disorder prediction 575 602 - -
Phco3g02446 1782 Gene3D - 608 689 - -
Phco3g02446 1782 Gene3D - 690 810 IPR023394 -
Phco3g02446 1782 CDD Sec7 615 797 IPR000904 GO:0005085|GO:0032012
Phco3g02446 1782 MobiDBLite consensus disorder prediction 1305 1328 - -
Phco3g02446 1782 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 344 502 IPR032691 -
Phco3g02446 1782 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 69 1647 - -
Phco3g02446 1782 Pfam Domain of unknown function (DUF1981) 1165 1247 IPR015403 -
Phco3g02446 1782 ProSiteProfiles SEC7 domain profile. 608 795 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02446 Phco-Chr3 51071566 51085662 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02446 3 51071566 51085662 Phco3g02446 3 51071566 51085662 ECH
Phco3g02446 3 51071566 51085662 Phco1g00940 1 9494413 9510285 PCT