Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00940 ATGGCTTCTCCGGAAGCCGATTCCCGTCTGAGTCTGGTCGTGGTCCCCGCGCTTGAGAAGATAATCAAGAATGCGTCGTGGAGGAAGCACGCCAAACTCGCTCATGAGTGCAAATCCGTCATTGAGAGGCTCGGCCATCAGCACCAGCACTTTCCGACGCCGGGATCTCCCTCCGACACCGAACCGGAGGCCGCGGTCCCTGGCCCGCTCCATGACGGCGGTCCATTGGAGTTCTCCTTGGCAGAGTCCGAGTCTATCCTCGCGCCTTTCATCAATGCTGCCGGCTCCGGCGTCCTCAAGATCGCCGATCCTGCCGTCGACGCCATTCAGAAGCTCATTGCGCATGGCTTCCTCCGCGGCGAGGTGGACCCGGACCCGGACTCCGCCGCTGCGGCGCCGGAGGCGAAGCTCCTGTCCAACCTCATAGAATCGGTCTGCAAATGCCACGATTTCGGCGACGAGGCGATGGAGTTGCTGCTCCTCAAGACCTTGCTCTCCGCCGTAACGTCAATTTCGCTCCACATCCACGGTGATTCCTTGCTTCTCATTGTGCGTACCTGCTATGATATATATCTCGTGAGTAAGAATGTGGTGAATCAGACGACGGCGAAGGCGTCGTTGATCCAAATGCTGGTGATCGTGTTCCGCCGCATGGAGGCGGATTCCTCCACTGTGCCCATTCAGCCGATTGTAGTGGCGGACTTGATGGAGCCTGTGGAGAAATCCGATGGAGACAATTCAATGACGCAGTTTGTGCAGGGCTTTATAACGAAGATAATGCAGGACATTGAGGGCGTTTTGAACCCTACGACGCCAAGTGGGAAGGTTAATTTGTTAGGTGGGCACGACGGTGCGTTTGAGACCACTACGGTGGAGACTACGAACCCTACTGATTTGTTAGATTCTACTGATAAAGACATGTTGGATGCTAAGTATTGGGAGATTAGTATGTATAAGACGGCATTAGAGGGACGGAAGGGGGAGCTTGTGGATGGGGAAGTGGTGGAGAGAGACGATGATTTGGAGGTTCAGATTGGGAACAAGTTGAGGAGAGATGCTTTTTTGGTGTTTAGGGCGCTTTGTAAGTTGTCCATGAAGACGCCTCCGAAGGAGGTGGTAGGGGACCCGCAGTTGATGAAGGGGAAGATCGTGGCTCTGGAGTTGCTGAAGATTTTGCTTGAGAATGCTGGGGCCGTGTTCAGGACTAGTGAAAGGTTTTTAGGTGCCATCAAACAGTACTTATGTTTATCCTTGTTGAAGAACAGTGCTTCAACTCTTTTAATTGTATTTCAGCTGTCATGCTCCATTTTCATCAGTCTGGTGTCAAGATTTAGAGTTGGATTGAAAGCAGAAATTGGAGTATTTTTTCCCATGATAGTTCTCAGGGTCCTAGAAAATGTTTCTCAACCTAATTTTCAGCAGAAGATGATAGTGCTTCGATTTCTGGAAAAGCTCTGTGTTGATCCACAGATATTGGTCGACATATTTATAAACTATGACTGTGATGTCAATTCATCCAACATATTTGAGAGGATGGTAAATGGACTCCTTAAAACTGCACAAGGTGTTCCTCCTGGTGTAACAACCACGCTTTTGCCACCCCAGGAAGCAACACTAAAACTTGAAGCCATGAAAAGCTTGGTCGCAGTTCTAAAATCAATGGGGGACTGGATGAACAAACAATTGCGCATTCCGGACCCTCGTTCAGCCAAGAAAGTTGAAGCATTGGATAACAGCCCTGAATCTGGAGGTTTTACCATGGTAAATGGGAATGGAGAAGACCCTCCTGATGGATCTGACACTCAATCAGAAGTCTCCAATGATGCTTCTGATGTTTCAAATATTGAGCAACGCCGGGCTTATAAACTGGAACTCCAGGAAGGTATATCACTTTTTAATAGGAGGCCTAAGAAAGGAATTGAGTTTCTCATCAATGCCAACAAGGTGGGTGATTCACCAGAGGATATAGCTGCTTTTCTTAAAGAAGCATCAGGGTTGAACAAGACTTCGATTGGTGATTACCTGGGAGAAAGAGAAGAGTTACCCTTGAAGGTAATGCATGCCTATGTGGATTCCTTTAACTTTCAAGGTATGGAGTTTGATGAGGCAATCAGGGTCTTTCTTCAAGGATTTAGACTGCCTGGTGAGGCACAGAAAATTGATAGGATCATGGAAAAGTTTGCTGAACGTTACTGCAAATGTAATTCAAAGGCCTTTTCTAGTGCTGACACAGCTTATGTCCTTGCCTATTCTGTTATAATGCTGAATACCGATGCTCACAATCCCATGGTGAAGAATAAGATGTCTCCTGATGATTTCATAAGAAACAATCGTGGCATTGATGATGGAAAAGATCTGCCTGAGGAATACTTGAAGTCCTTGTTTGACAGAATATCTAGAAATGAGATCAAAATGAAAGAAAATGATGTGGCTCCTCTTCAAAAGCAGGCTATGAACCCTAATCGACTTTTAGGCTTGGATAGTATATTGAATATTGTCATCCGCAAACGTGGTGAAGAGAATATGGAGACCAGTGATGATCTTATCCGTCATATGCAAGAACAATTCAAAGAAAAAGCTCGCAGATCTGAATCAATTTATTATGCAGCAACAGATGTTGTAATCCTTAGATTCATGATTGAGGTGTGCTGGGCACCGATGTTAGCCGCCTTCAGTGTTCCTCTTGATCAAAGTGATGATGAGGTTGTAATATCTCTGTGTCTTGAAGGCTTCCGCCATGCGATTCATGTTACTTCAGTAATGTCAATGAAGACTCATAGAGATGCTTTTGTGACGTCATTAGCAAAGTTTACCTCACTACATTCACCAGCAGATATTAAGCAGAAAAATGTCGATGCAATTAAGGCAATAGTTGTTATTGCTGATGAAGATGGAAATTACTTACAAGAAGCTTGGGAACATATCTTGACTTGCGTTTCTCGGTTTGAGCATTTACATCTTCTTGGAGAGGGGGCTCCACCAGATGCCACATTCTTTGCATTTCCTCAGAATGATTCAGAAAAAACAAAGCAAGCAAAGTCAACCATTCTTCCTGTTTTGAAGAAGAAGGGACTTGGGAGGATGCAGTATGCAGCTGCTTCATTGATGCGGGGTTCATATGATAGCGCTGGAATTGGTAGTAATGGTTCTGGAGTCACATCAGAACAGGTGAACAGTCTAGTTTCTAATTTAAATATGTTGGAACAAGTTGGAAACTCTGAAATGAGTCGCATATTCACTCGGAGTCAGAAGTTGAATAGTGAGGCCGTAATAGATTTTGTTAAGGCTCTGTGCAAGGTCTCCATGGAGGAACTGAGGTCTCCATCAGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCGCACTACAATATGAACCGCATAAGGCTTGTGTGGTCAAGTATCTGGCATGTTCTCTCTGATTTCTTTGTAACTATTGGTTGTTCTGCAAACCTTTCAATTGCAATTTTTGCAATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTGGAGCGGGAAGAGCTGGCTAATTATAATTTTCAAAATGAATTTATGAAGCCTTTTGTCATTGTTATGCGAAAGAGTAGTGCTGTTGAAATTAGAGAATTAATTATCAGATGTGTCTCTCAAATGGTTCTATCTCGTGTAAACAATGTCAAATCAGGATGGAAGAGCATGTTCATGGTATTCACAACAGCAGCCTACGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATGATTGAGAAGATTATTCGCGATTACTTCCCATGCATCACTGAGACTGAGACTACAACCTTCACAGACTGTGTAAATTGTCTAATTGCGTTTACCAATAGTAGATTCAATAAAGAGATTAGCCTAAATGCCATTGCTTTTCTTCGGTTTTGCGCAACAAAACTTGCAGCGGGAGACCTTGGCTCATCATCAAGGAATAAGGATAAGGAACTTTCGGGAAAGGTTTCCCCATCTTCACTTCAAACAAGGAAGGAGGGGAAAAATGAAAATGGAGAGGCTGCTGACAAGGATGATCATCTCGATTTCTGGTTTCCTTTATTGGCAGGTTTATCTGAGCTTAGCTTTGACCCAAGACCTGAGATTAGGAAGAGTGCCTTGGATGTCCTGTTTGAAACCTTACGTAACCATGGCCATCTCTTTTCACTAACTTTATGGGAAAGAGTATTTGAGTCTATCTTATTTCCAATATTCGATTACGTTCGACATGCTATTGATCCTTCAGGGAGTAGTTCACCAGTAAATGAAGTCGAGGCAGATGATGGTGAGCTTGATCAAGATGCTTGGCTTTACGAGACATGCACAATGGCCCTCCAATTGGTTGTAGATCTTTTTGTTAACTTTTACAACACTGTCAATCCACTTTTAAGAAAGGTGCTGTTGCTCCTGGTTAACTTTATAAATCGCCCTCATCAAAGCCTTGCGGGCATTGGTATTGCGGCTTTTGTTCGTTTGATGAGTAATGCGGGGGAGCTATTTTCTGATGAAAAGTGGTTAGAAGTGGTTTTCTCATTAAAAGAAGCAGCAAAGGCAACACGTCCTAACTTTTTTTTTCTGGAAAGCGAGGACTTCACTAGAAGTCCTGAGGGTGCTTCAACCACTGATGATAGAGATGTTGCTGAATCTGGCTTTCCAGTTAATTTAGTCAACTTGAGGACTCGTCGTGTTTATGCTCACTTAACTGATGCAAAATGCCGAGCTGCTGTTCAGCTTTTATTGATTCAGGCGGTGACGGAGATCTATGCCATGTATCGTTCTCACCTTCCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTTTGCACGGTATAGCGTTACACGCGCATCAGATTAACAACAATACCATATTACGTTCAAAGCTTCAAGAGTTTGGTTCTATGAGCCAAATGCAAGACCCTCCACTCTTACGCCTAGAGAATGAATCGTACCAGATCTGCCTTACATTTTTACAAAACCTTGTCATTGACAAGCCTCCTAGCTATGAGGCGGATGAGGTTGAATCTCATCTGATTCAGCTTTGTCAGGAGGTTTTGGAGTTTTATATTGAAGTTGCAGGTTTTGGACAAAAATCTGAATCTTCTCATGTTCGAGAGCCACATTGGTATATTCCCTTGGGCTCCGGGAAGAGTAGAGAATTGGCTTCTCGTTCACCTCTCATTGTGGCTACTCTGCACGCTATTTGCAGTTTGGGAGATATTTCCTTTGAGAAGAACCTGTCTCATTTCTTCCCTCTTATTTCTAGCTTGGTACGTTGTGAACATGGGTCCAAGGAAGTCCAGGTTGCTCTCAGTGACATGCTTACTTTATCAGTTGGTCCTGTTTTGCTACAGTCATGTTGA 5361 0.4406 MASPEADSRLSLVVVPALEKIIKNASWRKHAKLAHECKSVIERLGHQHQHFPTPGSPSDTEPEAAVPGPLHDGGPLEFSLAESESILAPFINAAGSGVLKIADPAVDAIQKLIAHGFLRGEVDPDPDSAAAAPEAKLLSNLIESVCKCHDFGDEAMELLLLKTLLSAVTSISLHIHGDSLLLIVRTCYDIYLVSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVADLMEPVEKSDGDNSMTQFVQGFITKIMQDIEGVLNPTTPSGKVNLLGGHDGAFETTTVETTNPTDLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEVVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEVVGDPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRVGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLEKLCVDPQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEATLKLEAMKSLVAVLKSMGDWMNKQLRIPDPRSAKKVEALDNSPESGGFTMVNGNGEDPPDGSDTQSEVSNDASDVSNIEQRRAYKLELQEGISLFNRRPKKGIEFLINANKVGDSPEDIAAFLKEASGLNKTSIGDYLGEREELPLKVMHAYVDSFNFQGMEFDEAIRVFLQGFRLPGEAQKIDRIMEKFAERYCKCNSKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSPDDFIRNNRGIDDGKDLPEEYLKSLFDRISRNEIKMKENDVAPLQKQAMNPNRLLGLDSILNIVIRKRGEENMETSDDLIRHMQEQFKEKARRSESIYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVISLCLEGFRHAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKAIVVIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKTKQAKSTILPVLKKKGLGRMQYAAASLMRGSYDSAGIGSNGSGVTSEQVNSLVSNLNMLEQVGNSEMSRIFTRSQKLNSEAVIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSANLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEMIEKIIRDYFPCITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAAGDLGSSSRNKDKELSGKVSPSSLQTRKEGKNENGEAADKDDHLDFWFPLLAGLSELSFDPRPEIRKSALDVLFETLRNHGHLFSLTLWERVFESILFPIFDYVRHAIDPSGSSSPVNEVEADDGELDQDAWLYETCTMALQLVVDLFVNFYNTVNPLLRKVLLLLVNFINRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVFSLKEAAKATRPNFFFLESEDFTRSPEGASTTDDRDVAESGFPVNLVNLRTRRVYAHLTDAKCRAAVQLLLIQAVTEIYAMYRSHLPAKAMLVLFDALHGIALHAHQINNNTILRSKLQEFGSMSQMQDPPLLRLENESYQICLTFLQNLVIDKPPSYEADEVESHLIQLCQEVLEFYIEVAGFGQKSESSHVREPHWYIPLGSGKSRELASRSPLIVATLHAICSLGDISFEKNLSHFFPLISSLVRCEHGSKEVQVALSDMLTLSVGPVLLQSC 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00940 1786 MobiDBLite consensus disorder prediction 595 613 - -
Phco1g00940 1786 MobiDBLite consensus disorder prediction 1309 1343 - -
Phco1g00940 1786 SMART sec7_5 618 803 IPR000904 GO:0005085|GO:0032012
Phco1g00940 1786 Pfam BIG2 C-terminal domain 1577 1774 IPR046455 -
Phco1g00940 1786 ProSiteProfiles SEC7 domain profile. 614 801 IPR000904 GO:0005085|GO:0032012
Phco1g00940 1786 Pfam Domain of unknown function (DUF1981) 1170 1252 IPR015403 -
Phco1g00940 1786 CDD Sec7 621 803 IPR000904 GO:0005085|GO:0032012
Phco1g00940 1786 Gene3D - 613 695 - -
Phco1g00940 1786 Pfam C-terminal region of Mon2 protein 1351 1412 IPR032817 -
Phco1g00940 1786 SUPERFAMILY ARM repeat 385 1517 IPR016024 -
Phco1g00940 1786 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 604 694 - -
Phco1g00940 1786 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 221 IPR032629 -
Phco1g00940 1786 Gene3D - 696 816 IPR023394 -
Phco1g00940 1786 MobiDBLite consensus disorder prediction 47 73 - -
Phco1g00940 1786 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 350 508 IPR032691 -
Phco1g00940 1786 Pfam Sec7 domain 622 803 IPR000904 GO:0005085|GO:0032012
Phco1g00940 1786 SUPERFAMILY Sec7 domain 618 809 IPR035999 GO:0005085|GO:0032012
Phco1g00940 1786 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 77 1651 - -
Phco1g00940 1786 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 696 814 - -
Phco1g00940 1786 MobiDBLite consensus disorder prediction 568 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00940 Phco-Chr1 9494413 9510285 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02446 3 51071566 51085662 Phco1g00940 1 9494413 9510285 PCT