Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02440 ATGGCCAACCTTCCTCTTCAGAAGAGTCTTGCTGAAGTGTGTGGAATCTTTTTGACTGGGCATGATCTTTGCATTCTGAACAGTCCTCAATTTTATTTTGCTGTTGGTTTGATTGAGTGGAGTAAGGAAAGGGAAGAGTTTGATATATGCATGGAAGGAAGAGAAGGGATCAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCCTATCATATGGCACCAAGGAGTGAAGCTCCAAGTCAGGGTGGTCCTCCTGTGCCTGAAGCACCACCTGCAGCTATTGGTGTGTCACCAGTGAGTCTAGCATTGGATGGAACATCAATCAAGAAGAAAAGGGGCAGACCAAGAAAATATGGGCCAGATGGGTTGGTGAATATGGCATTGTCACCCATGCCAATCTCATCTTCCGCCCCATTTTCTAATAATAACTTTTCATCTGGGAAGCGAGGGAGACCGCGGGGGATGGATTACAAGCTGCCAAAGAAACTTGGAATGGATTATCTTGGTGGCACTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAACAGTGGCGAGGATATAGCAATGAAGATTATATCTTTTTCTCAACAAGGACCACGTGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTCGAGATACTTTCCTTGTCGGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGGTCTGGAGGGATGAGTGTTTCATTGTCAAGTCCAGATGGTCGCGTTGTAGGTGGTGGAGTTGCTGGTCTACTTGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCGTGCAACCAGCAAGATCAGAAGCCAAAGAAGCCAAAGTCTGATTATGCATCAGCTACTGTTACCCCTCTCATGGCAGTGTCCTCTGCACCACCCTCTACCAATGGTGAAAAGGAGGTTGTCATGGGTGGACACATACTGCACAACTCAGGAACAACCCTTAACTCAAACCTTGCTTCTCCCTCGGCCTTTCGCCGGGAAAACTGGGTTAACATGCACTCGATGACAGACTCGATGAAGTCAGCCACTGATATTAACATATCCTTGCCTGATAGTTAA 1161 0.4677 MANLPLQKSLAEVCGIFLTGHDLCILNSPQFYFAVGLIEWSKEREEFDICMEGREGISSGVTVIGAEAPSAYHMAPRSEAPSQGGPPVPEAPPAAIGVSPVSLALDGTSIKKKRGRPRKYGPDGLVNMALSPMPISSSAPFSNNNFSSGKRGRPRGMDYKLPKKLGMDYLGGTDGTSFMPHIITVNSGEDIAMKIISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCNQQDQKPKKPKSDYASATVTPLMAVSSAPPSTNGEKEVVMGGHILHNSGTTLNSNLASPSAFRRENWVNMHSMTDSMKSATDINISLPDS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02440 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 293 IPR005175 -
Phco3g02440 386 ProSiteProfiles PPC domain profile profile. 175 316 IPR005175 -
Phco3g02440 386 CDD DUF296 180 270 IPR005175 -
Phco3g02440 386 Gene3D - 180 314 - -
Phco3g02440 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 297 - -
Phco3g02440 386 FunFam AT-hook motif nuclear-localized protein 1-like 180 311 - -
Phco3g02440 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 76 360 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02440 Phco-Chr3 50966598 50971653 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02440 3 50966598 50971653 Phco3g02440 3 50966598 50971653 ECH
Phco3g02440 3 50966598 50971653 Phco1g00944 1 9598481 9602860 PCT