Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02388 ATGGAGAGAAGAAGGTTTAGCTATGAGGTGCTGGTGGCTTTGCTGACCCTTTTGCTCTTCTCATTGACTTGTGCCACTGCTTCATCATCAGACCCAACACAACTCCATGACCATGTGGAGCAACCCAAGAGGAATCTTCTTGCTAATGGCCTTGGTAAAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTTTCTTGTCAAATTAACGAAAAAATCATCAGAGAAACTGCTGATGCACTTGTTTCTACTGGTCTTTCTAAGCTTGGATACACATATGTGAATATAGATGATTGTTGGGCTGAATTAAACCGGGATGCTACTGGTAATCTGGTAGCAAAAAAATCAACATTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACAGCAAAGGTCTTAAACTTGGAATTTATTCAGATGCTGGGTATTTAACTTGTAGCAAACAGATGCCAGGTTCTCTTGGTCATGAATTTCAAGATGCCAAGACTTTTGCATCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGACGAATCAAAACCAACTGATAGATACCCTGTTATGACTCGGGCTTTATCTATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATGGGGAGACTTGCACCCTGCTTTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTACTGATTCATGGGAAAGCATGATTTCAAGGGCAGACATGAACGAAGTTTATGCTGAATATGCAAGACCTGGTGGTTGGAATGATCCTGACATGCTTGAGGTGGGAAACGGAGGGATGAAAAAGAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGAAATATGACTAAAGAGACTGTGGAGATTGTAACAAATAAGGAAGTTATTGCAGTTAACCAAGATTCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATATTGAGATTTGGGCAGGTCCTCTTTCAAGGTACAGGGTGGCTGTTATCTTGCTTAATCGTGGCCCTTGGAATATTTCCATTACAGCCAACTGGGATGACATTGGTATTCCATCAAAAAGTGTTGTTCAAGCAAGAGACCTCTGGGAGCACAAGACATTGGTGGAACGCTTTCAGGAAAAATTGACTGCCCAAGTTGATCCACATGCGTGTAAAATGTACGTGCTGAAGCCAGTTGCTTGA 1236 0.4167 MERRRFSYEVLVALLTLLLFSLTCATASSSDPTQLHDHVEQPKRNLLANGLGKTPPMGWNSWNHFSCQINEKIIRETADALVSTGLSKLGYTYVNIDDCWAELNRDATGNLVAKKSTFPSGIKALADYVHSKGLKLGIYSDAGYLTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDESKPTDRYPVMTRALSMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDITDSWESMISRADMNEVYAEYARPGGWNDPDMLEVGNGGMKKNEYIVHFSLWALSKAPLLLGCDVRNMTKETVEIVTNKEVIAVNQDSLGVQGKKVRMEGDIEIWAGPLSRYRVAVILLNRGPWNISITANWDDIGIPSKSVVQARDLWEHKTLVERFQEKLTAQVDPHACKMYVLKPVA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 49 68 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 274 295 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 85 100 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 161 178 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 188 206 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PRINTS Glycosyl hydrolase family 27 signature 253 272 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 CDD GH27 55 318 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 SUPERFAMILY Glycosyl hydrolase domain 320 410 - -
Phco3g02388 411 Pfam Alpha galactosidase A 54 318 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 14 409 IPR002241 GO:0004553|GO:0005975
Phco3g02388 411 Pfam Alpha galactosidase C-terminal beta sandwich domain 330 407 IPR041233 -
Phco3g02388 411 Gene3D - 321 410 IPR013780 -
Phco3g02388 411 Gene3D Aldolase class I 47 320 IPR013785 -
Phco3g02388 411 FunFam Alpha-galactosidase 47 320 - -
Phco3g02388 411 SUPERFAMILY (Trans)glycosidases 48 318 IPR017853 -
Phco3g02388 411 ProSitePatterns Alpha-galactosidase signature. 90 106 IPR000111 GO:0004553|GO:0005975
Phco3g02388 411 FunFam Alpha-galactosidase 321 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02388 Phco-Chr3 50459180 50462682 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g02034 1 60106362 60109522 Phco3g02388 3 50459180 50462682 PCT