Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02034 ATGTTGATGTTTGTTGTGGTGACACTTATGTTTTGTTCTGTCTGTGATTCTTCAAGGTTGTTGAAGAATGTTGAAAGCCAACATGGTAGAAATCTTCTTAACAATGGCCTTGGTGCCACTCCTCCAATGGGGTGGAATAGCTGGAATCATTTCCACGAACATATTAATGAGACAATCATCAGAGAAGCAGCTGATGCCCTTGTTTCTTCGGGTCTTTCTGAGCTTGGATACACTTATGTTAACATAGATGATGGCTGGGGTGAAATGAGTCGAGATCTCGATGGTAATTTGGTAGCTGATAAAACAAAATTTCCTTCTGGCATCAAAGCTTTAGCAGATTATGTTCATGAGAATGGTCTGAAGCTTGGCATTTATTCAGATGCAGGGTATTATACTTGTGCAAAACGTATGCCAGGTTCACTTGGTTATGAAGAGCAAGATGCCAAGACTTTTGCATCCTGGGGTGTTGATTATCTCAAGTATGATAATTGTAACAATGGTGGAATAAAGCCTCTTGATAGATATCCTATCATGACTCGAGCTTTGATGAAGGCAGGCCGTCCGATCTACTTCTCAATATGTGAATGGGGAGACATGCACCCTGCATTGTGGGGTTATCCAGTGGGAAATAGCTGGAGAACTTCTGATGACATTACTGATAACTGGGAAAGAATGCTTTCAAGGATAGACACCAATGATGTTTATGCTGATTTTGCAAAACCTGGTGGTTGGAATGATCCTGACATGCTGGAGGTAGGAAATGGAGGAATGAAGAAACATGAATACATTGTTCACTTCAGTTTATGGGCCATTGCCAAGGCTCCTCTTCTTATTGGCTGTGATCCTGGAAATATGACAGATGACACTATAGAGATACTATCAAATGCAGAGGTTATTGCTGTCAACCAAGATCCACTTGGTATACAAGGTAAAAAGGTTAGGATGGAAGGTGCTCTGGAGATTTGGGCAGGTCCTCTATCAGGATACAGGGTGGCTGTTCTCATACTCAACAAATATGGTGATAGGCGTGCAGTGATTAGTGCTGAATGGGATGATATTGGGCTTGACCCTTCAACTGTTGTTGAAGCAAGAGACCTTTGGGAGCACGAGACATTGAAAAGACAATTCGTGGGAAAATTGACTGTCACTGTTGAACCACATTCTTGCAAAATGTATGTGTTGAAGCCAATAGCTTGA 1197 0.4169 MLMFVVVTLMFCSVCDSSRLLKNVESQHGRNLLNNGLGATPPMGWNSWNHFHEHINETIIREAADALVSSGLSELGYTYVNIDDGWGEMSRDLDGNLVADKTKFPSGIKALADYVHENGLKLGIYSDAGYYTCAKRMPGSLGYEEQDAKTFASWGVDYLKYDNCNNGGIKPLDRYPIMTRALMKAGRPIYFSICEWGDMHPALWGYPVGNSWRTSDDITDNWERMLSRIDTNDVYADFAKPGGWNDPDMLEVGNGGMKKHEYIVHFSLWAIAKAPLLIGCDPGNMTDDTIEILSNAEVIAVNQDPLGIQGKKVRMEGALEIWAGPLSGYRVAVLILNKYGDRRAVISAEWDDIGLDPSTVVEARDLWEHETLKRQFVGKLTVTVEPHSCKMYVLKPIA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02034 398 CDD GH27 41 304 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 SUPERFAMILY Glycosyl hydrolase domain 306 397 - -
Phco1g02034 398 Gene3D Aldolase class I 33 306 IPR013785 -
Phco1g02034 398 Gene3D - 307 397 IPR013780 -
Phco1g02034 398 SUPERFAMILY (Trans)glycosidases 33 305 IPR017853 -
Phco1g02034 398 Pfam Alpha galactosidase A 40 304 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 396 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 ProSitePatterns Alpha-galactosidase signature. 76 92 IPR000111 GO:0004553|GO:0005975
Phco1g02034 398 Pfam Alpha galactosidase C-terminal beta sandwich domain 316 394 IPR041233 -
Phco1g02034 398 FunFam Alpha-galactosidase 33 306 - -
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 71 86 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 147 164 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 35 54 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 239 258 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 260 281 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 112 133 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 PRINTS Glycosyl hydrolase family 27 signature 174 192 IPR002241 GO:0004553|GO:0005975
Phco1g02034 398 FunFam Alpha-galactosidase 307 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02034 Phco-Chr1 60106362 60109522 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g02034 1 60106362 60109522 Phco3g02388 3 50459180 50462682 PCT