Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02377 ATGGGCACAAAGCTGAGTCTTTTGTTGTGTGTTTGGGTTTTGCTATTGGGGTGTACTGTGGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAGAGTGACTGCACCCACATCGTTGAAGGGGACATATGAATGTGCAATTGGAAATTTTGGGGTTCCCAAGTACGGAGGAACATTGGTTGGTTCTGTGGTATACCCAAAGGTGAATCAGAAGGGGTGCCTCAACTTCACTGATGTCAATTTTCAGTCCAAGCCAGGAGTGTTCCCCACTTTTCTTCTTGTGGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCTGAAGAAGGGAAAGGTACAAATGATGATTATGTGGACAATATTAGTATTCCTTCTGCTCTTATCAGCAAATCCTTCGGGGATAGCATCAAGAAAGCTCTTTCTGATGGGGACATGGTTAACATTAATCTTGATTGGAGAGAGGCTCTTCCGCATCCTGATGATAGAGTTGAGTATGAGTTATGGACAAATAGCAACGACGAGTGTGGGCCAAAGTGCGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCTGCTCGAGCAGAAAGGGTTCACTCAGTTTACACCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAAACAGTGCAAGTCTCAATGCATAAACAATGGAAGGTACTGTGCTCCAGATCCCGAGCAAGATTTCAGTAGAGGGTATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCCTGGAAGTGGTGGGACTATGTTACCGACTTTTCAATTCGTTGCCCCATGAAAGAGAACAAGTACACAGAAGAATGCTCAGATGAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAGGACTGTGTTGGTGATCCCCATGCAGATGTTGAAAATGCTGTTCTTAAGGCTGAGCAGGATGCACAGATTGGCAAAGGCACTCGTGGTGATGTCACTATACTGCCTACTCTTATTATAAACGACAGACAGTATAGAGGTAAGTTGTCAAGACCCGCTGTTCTCAAGGCACTCTGTGCAGGTTTCCTAGAGACCACTGAACCATCAGTTTGCTTAACTCCAGAAATGGAAACAAACGAGTGTTTGGTAAACAATGGTGGTTGTTGGAAGGAAGAATCCTCTAACATTACTGCTTGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTGTAGTACAAAATGTGAAATTTGTTGGAGATGGGTATACCCACTGTGAAGCATCGGGAACCTTGAGCTGTGACTTCAACAATGGTGGTTGTTGGAAGGGATCTCAAGGTGGCAAGGCTTACACGGCTTGTCTGGATGACTACAGAAAAGGCTGTACATGTCCTCCTGGGTTCAGAGGTGATGGAGTCAAGTCATGTGAAGATATTGATGAGTGCCAAGAGAAAACAGCCTGCCAATGCGCAGGTTGCAAATGCAAAAACACCTGGGGAAGTTATGAGTGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGACACATGTCTAGGTGCATATTCTGCTTCAGGGGTGAGCATCTGGATGATAATGCTCATCGTGGTTGTTGCTGTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATACATGGATTCAGAAATACGGGCAATTATGGCACAATACATGCCTTTGGATAATCAACCTGAGGTCCCTAATCAAGTTCATCACAACATCTAG 1860 0.4403 MGTKLSLLLCVWVLLLGCTVGRFVVEKNSLRVTAPTSLKGTYECAIGNFGVPKYGGTLVGSVVYPKVNQKGCLNFTDVNFQSKPGVFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKGTNDDYVDNISIPSALISKSFGDSIKKALSDGDMVNINLDWREALPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQLLEQKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFYKVANESGKPWKWWDYVTDFSIRCPMKENKYTEECSDEVIKSLGADLKKIKDCVGDPHADVENAVLKAEQDAQIGKGTRGDVTILPTLIINDRQYRGKLSRPAVLKALCAGFLETTEPSVCLTPEMETNECLVNNGGCWKEESSNITACRDTFRGRVCECPVVQNVKFVGDGYTHCEASGTLSCDFNNGGCWKGSQGGKAYTACLDDYRKGCTCPPGFRGDGVKSCEDIDECQEKTACQCAGCKCKNTWGSYECKCGSGLFYSRENDTCLGAYSASGVSIWMIMLIVVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEVPNQVHHNI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02377 619 Gene3D Glutaredoxin 248 396 - -
Phco3g02377 619 FunFam Vacuolar-sorting receptor 1 20 183 - -
Phco3g02377 619 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 9 609 - -
Phco3g02377 619 Gene3D - 20 183 - -
Phco3g02377 619 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Phco3g02377 619 SMART egfca_6 513 555 IPR001881 GO:0005509
Phco3g02377 619 Gene3D Laminin 407 452 - -
Phco3g02377 619 CDD EGF_CA 513 544 - -
Phco3g02377 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Phco3g02377 619 Gene3D Laminin 467 551 - -
Phco3g02377 619 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
Phco3g02377 619 Pfam PA domain 60 160 IPR003137 -
Phco3g02377 619 SUPERFAMILY PA domain 90 167 IPR046450 -
Phco3g02377 619 FunFam vacuolar-sorting receptor 1 406 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02377 Phco-Chr3 50357658 50362658 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02377 3 50357658 50362658 Phco3g02377 3 50357658 50362658 ECH
Phco3g02377 3 50357658 50362658 Phco1g02022 1 60040838 60047162 PCT