Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02022 ATGATGACAATGAGAACAAAGCAAAGTTTTTTGTGGTGTGTATGGATTTTGCTTTGTGGGTCTTGTGTGGGAACGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCTCCAAATTCATTGAAAGGTATATATGAATGTGCAATTGGGAATTTTGGGGTCCCAAAGTATGGAGGAACCATGATTGGCTCAGTGGTGTACCCCAAGACCGATCAGAATGGATGTAAACCCTTTGATTCCTCGTTGAGTTCCAAGCCCGGAACCTTCCCCAGCTTTGTTCTTATTGATCGAGGAGAGTGCTTCTTCACTTTAAAGGCGTGGAATGCACAGAAAGGTGGAGCAGCGGCCATTCTTGTCGCAGATGATAGGACAGAACCATTGATCACCATGGACACACCTGAAGAAGGAAATGGTGCCAGCAATGACGATTATATTGAGAAGATCAGCATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAAAATCAAGAGTGCTCTCTCTAGTGGGGAAATGGTTAATGTAAATCTTGATTGGAGAGAGGCTCTTCCTCACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATCAACTTTGTCAAGGGTTTTAAAGGGGCAGCTCAATTACTAGAGCAGAAAGGGTTTGCAAAGTTTACCCCTCACTATATAACTTGGTATTGTCCAGAAGCATTTATATTGAGCCAACAGTGCAAGTCCCAGTGCATAAATAATGGGAGATACTGTGCACCAGATCCTGAGCTAGATTACAAAAGAGGGTACAGTGGTAGAGATGTTGTTATCCAAAACTTACGTCAAGTATGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTACGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTATACTGAAGAATGCTCAGATCAAGTTATCAAATCTCTCGGAGTTGATTTGAAGAAAGTTAAAGATTGTGTAGGAGATCCTAGTGCGAATGTCGACAACCCTGTTCTCAATAATGAACAGGACTCACAGATTGGTAACGGCGATCGTGGAGATGTTACTATACTACCTACTCTTATTATAAACAACAGACAATATAGAGGTAAGCTGTCAAAAGCAGCAGTACTGAAGGCAATCTGTTCAGGTTTCCAAGAGACTACCGAGCCATCAATTTGTTTAACTCCAGACATGGAAACTAATGAGTGTTTGCAAAACAATGGTGGTTGTTGGCAGGACAATGCTGCTAACATTACTGCGTGCAGGGACACTTTCAGAGGAAGAATATGTGAATGCCCAGTTGTACAAAATGTCCAGTTTGTTGGTGATGGATATACCCATTGTGAAGCTACAGGCGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGAAACCCAAGGTCGCACAACTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCAAGGGAGATGGAGTCAACTCCTGTAAAGATGTGGACGAATGCAAGGAGAAATTGGCCTGTCAGTGCCCAGAATGTCATTGCAAAAATACTTGGGGAAGTTATGATTGCTCATGTAGTGATGGTTTGTTCTACACGCGAGAAAATGATATGTGCATTGGAAAATATGCTGCGTCAGTGGCCGGTGGGGGCATTGTTTGGATGGTTATTCTGATCTTGGCTGTTGCTGGTGCTGGAGGGTATGCATTTTACAAATACAGAATCCGGAGATACATGGACTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGAGACTTCCACTCAAACTCATGAAGATGTCTAG 1878 0.4297 MMTMRTKQSFLWCVWILLCGSCVGTFVVEKNNLKITSPNSLKGIYECAIGNFGVPKYGGTMIGSVVYPKTDQNGCKPFDSSLSSKPGTFPSFVLIDRGECFFTLKAWNAQKGGAAAILVADDRTEPLITMDTPEEGNGASNDDYIEKISIPSALISKSLGDKIKSALSSGEMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKGFKGAAQLLEQKGFAKFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPELDYKRGYSGRDVVIQNLRQVCFFKVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGVDLKKVKDCVGDPSANVDNPVLNNEQDSQIGNGDRGDVTILPTLIINNRQYRGKLSKAAVLKAICSGFQETTEPSICLTPDMETNECLQNNGGCWQDNAANITACRDTFRGRICECPVVQNVQFVGDGYTHCEATGALRCAINNGGCWKETQGRTTFSACIDDHTKGCKCPPGFKGDGVNSCKDVDECKEKLACQCPECHCKNTWGSYDCSCSDGLFYTRENDMCIGKYAASVAGGGIVWMVILILAVAGAGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPETSTQTHEDV 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02022 625 Pfam PA domain 63 163 IPR003137 -
Phco1g02022 625 FunFam Vacuolar-sorting receptor 1 23 186 - -
Phco1g02022 625 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Phco1g02022 625 SMART egfca_6 516 558 IPR001881 GO:0005509
Phco1g02022 625 CDD EGF_CA 516 547 - -
Phco1g02022 625 Gene3D Laminin 410 457 - -
Phco1g02022 625 FunFam vacuolar-sorting receptor 1 409 465 - -
Phco1g02022 625 Gene3D Laminin 469 558 - -
Phco1g02022 625 Gene3D - 23 186 - -
Phco1g02022 625 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 2 621 - -
Phco1g02022 625 SUPERFAMILY PA domain 92 173 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02022 Phco-Chr1 60040838 60047162 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02377 3 50357658 50362658 Phco1g02022 1 60040838 60047162 PCT