Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02356 ATGAAAAGCAGTGAAGGTGAGGAAGGAACAAGAAACTGTGGTTGTGGCAGATTTCTTCATGACCTTCCTCAACAGTTACACAACCTTCTCAAAGAACTTTTCCCTACCCTTTCTCTCTCTGAGGTAAAAGAAGAGTTTAAATCACTGGCGAACATCGCATGTCCAATAATGGTGACCAACGTGCTTTTGTACTCACGATCTGCCATTTCCATGCTTTTCTTGGGTCGGCAAGGGAAAGTTGAGCTAGCTGGAGGAGCACTTGCAATAGGGTTTACCAACATCACTGCAAATTCATTTCTCAAGGGTCTTACCATGGGAATGGACCCAATTTGTTGCCAAGCATATGGAGCAAAAAGATGGCCAGTTCTAAGCCAAACCTTTTGCAAAACCTTGTGTCTTCTCTTCCTTGCTGCCATTCCCATTTCACTACTATGGCTAAACATGGCACCCCTCCTTCGGTGGCTAGGACAAGACCCTGAAGTCACAAAGGTTGCACAAGCTTACATGGTCTTCTCTATCCCAGAATTGCTTGCCCAAGTTCATCTCAATCCATTGAGGTCTTTCTTGAGAACCCAAGGCTTAACAGCTCCACTAACTGTAGCTGCCTCTTTTGCTGCCATTTTACACCTTCCAATAAATTACTTCTTTGCTACATATTTGAAGTTGGGAGTGAAAGGCATTGCATTAGCCACAGGTTTGAACTCAATAAACATGATCCTAGGCTTAGTGCTTTATCTTCTTGTGTCTGAGAAACCTCTAAAACCTTGGGAAGGTGCCACTATTCTCTCTTCCTTTCGTGATTGGAGACCGTTGCTAAGTCTAGCATTGCCAAGTTGCATCTCAGTGTGCTTGGAGTGGTGGTGTTATGAGATAATGCTCTTCCTATGTGGCTTGTTGAGTAATCCACAAACCACAGTTGCTACCATGGGTGTCCTAATTCAAACAACAGGGTTCCTGTATGTATTCCCATTTTCATTGAGTGCTGCCTTGACAACACAAATTGGTCACTCACTAGGTGCAGGGCAACCCTCACGTGCACAAAGTACAGCCACAATAGGACTTTTCTTAGCATTTGCATCTGGGGTCTCAGCCTTTGTTTTCTTGATGTTTGTGAGGAAAGTGTGGGGGAAACTCTTCACAACTGAGGCACAAATTGTTGATATGGTCACAACCATACTTCCAATTTTGGGGTTGTGTGAGATTGGTAACTGGCCTCAAACTGCTGCATGTGGGATCTTATCAGGGACTGCACGCCCTTATGTGGGTGCAAGAATAAACCTGTGTGCATTTTACTTAATAGGGTTGCCAGTTGCAGTTTTTGCTGCTTTCATGCACAGATACCAATTGAGGGGTTTGTGGTTTGGCATGTTGGCTGCACAGATTTCGTGTTTTTGTATGATGGTGTACACTTTGATTCAAACTGATTGGGGGCATCAAAGTAAACGAGCTGAGCAACTAGCTCGAAGAAGAGATGATGAGGAAAATGTAAATGATGATGAGGAATGTGGACTCCTTAATTCTGATTTATGA 1530 0.4373 MKSSEGEEGTRNCGCGRFLHDLPQQLHNLLKELFPTLSLSEVKEEFKSLANIACPIMVTNVLLYSRSAISMLFLGRQGKVELAGGALAIGFTNITANSFLKGLTMGMDPICCQAYGAKRWPVLSQTFCKTLCLLFLAAIPISLLWLNMAPLLRWLGQDPEVTKVAQAYMVFSIPELLAQVHLNPLRSFLRTQGLTAPLTVAASFAAILHLPINYFFATYLKLGVKGIALATGLNSINMILGLVLYLLVSEKPLKPWEGATILSSFRDWRPLLSLALPSCISVCLEWWCYEIMLFLCGLLSNPQTTVATMGVLIQTTGFLYVFPFSLSAALTTQIGHSLGAGQPSRAQSTATIGLFLAFASGVSAFVFLMFVRKVWGKLFTTEAQIVDMVTTILPILGLCEIGNWPQTAACGILSGTARPYVGARINLCAFYLIGLPVAVFAAFMHRYQLRGLWFGMLAAQISCFCMMVYTLIQTDWGHQSKRAEQLARRRDDEENVNDDEECGLLNSDL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02356 509 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 476 - -
Phco3g02356 509 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco3g02356 509 Pfam MatE 55 215 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco3g02356 509 CDD MATE_eukaryotic 45 482 IPR045069 GO:0042910|GO:1990961
Phco3g02356 509 NCBIfam MATE family efflux transporter 55 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02356 Phco-Chr3 50182299 50186430 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02356 3 50182299 50186430 Phco1g01104 1 13239119 13245411 PCT