Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02242 ATGAGAATCGATCAAATCTTCTCCCATATCTTCATACCCCTGTGCATGATATTCTTGAATATCAACCTCAACGTAGCAACGTGCCACAGTCTTCATCATCAACAATTCTTATTACTTCACTTGAAAGAAAACCTGCTATTCAACCCAGCCACATCCAAAAAATTGGTCTACTGGAACCAAAGCAGCGATTGCTGTCAGTGGAATGGAGTAACATGCAGCATGGGCGGTGTAATTGGTCTTGACTTGAGTGAGGAGTTTATTTTTGGAGGACTAGATAATTCCAGCCTGTTTGAACTGGAATATTTGCAGAGGTTGAATCTGGCTTACAATGATTTCAATTCTTCCATTCCTTTGAAGTTTGGCAAGCTAAAAAGTTTGAGGTATTTGAATTTATCAAATGCTGGATTTTATGGCCAGATTCCAAGTGAGATTTCTCATCTGACAAATTTGATAATACTTGACTTGTCAACACCACTTACCTCACAACCTATTCTCAAACTCCAGAATTCAAATATTGCAATGTTTTTGCAGAATCTTGAAAAAATCACAGAACTATACCTTGATGGTGTAAAGGTATCTGTTGAGGGAAAGGAGTGGTGTCATGCTCTATCTTCTCTTCAAAAACTTGAAGTGTTGAGCATGTCATCTTGCAATATCTCTGGACCAATTGATTCTTCACTAGCAACACTCGTGAAGCTCTCAGTAATTAGACTGAGTCTGAATAACATCTCAAGTTCGGTGCCAAAATTCTTTGCAAATTTCTCCAATTTGAATGTCTTAGAGATTAGCAGTTGCTCGTTGAGTGGTCATTTTCCAAAGGGCATCTTTCAACTACAAACCCTAAAGGTTCTTGATATATCAAACAACAGGGATCTTCATGGAGTTTTGCCAAACTTCTTACCAGATGCTGTTCTTCACACCATGAATCTTAGTAATACAAATTTCTCTGGTAAGTTACCAGGTGCTATTTCAAATCTGAAGCAGTTGTCTTTGTTAGATGCATCTAACTGTCAACTTATTGACACACTCCCAATTTCCTTGTCAGAACTCACTCAACTTGTTCATTTGGACTTGTCTTTTAATAGGTTTACTGGTCCCCTTCCCTCTTTCAAGATGGTAAAAAATCTCAGATATTTATCAATCTTCCACAATAATCTGACAGGAGTCATCACTACAACTCATTTTGAGGGACTTGAAAATCTTCTCAGTATTAATTTAGGAGATAATTACCTTAATGGAAACATTCCCATGTCTCTTTTTACACTTCTATCTTTGCAAGAGCTTACACTTTCTCATAATCAACTTGATGGCCTATTAGATGAATTTCTAAATGCTTCTTCCTCAAAATTAGAGTTGATTGACTTGAGCAACAATATATTGCATGGTCCTATTCCCGTGTCTATCTTTCATATCAAAGGACTTCGTTTCCTACAACTTTCTGACAATGAATTCAATGGCACCATGCGGCTGGATATGGTTCACAGGCTTCAAAATTTGCATACATTAGGTCTTTCACACAACAAATTATCAGTTGATGTAACTCTTGATGATCATGACATTTCATCCTTTCCCAGCATGAAATATTTACTTTTGGGTTCTTGCAATTTAGGAAAATTTCCGGGGTTCTTGAGAAACCAATCCCAAATAAATGCTTTAGACCTATCCAACAACCATATTGAAGGAAAAATACCTAACTGGATCTGGAGATTTAAATATCTGATTTATTTAAATCTTTCCAACAATTTTCTCACAAATATGGAAGGACCCTTTGATGATCTGAATTCCAATCTATACATCCTTGATCTTCATTCCAATCAACTCACTGGATCAGTTCCCACTTTCACAAAATATGCGGCCCATTTGGACTACTCGAACAATAAATTCAGCACTGCACCACTCGACATGGATAAGTATGTTCCTTTTCTATACTTTCTCTCCCTTTCAGAGAACAACTTTCAAGGAAAAATCCCCGAATCCTTTTGTAATTTGTCTTCTCTCCGGTTGCTTGATCTTTCTTATAATAGCTTCAATGACCTCATCCCCAAGTGCTTGATGAGAAGGAATAGTACCCTCCGAGTACTAAATCTTGCTGAAAACAAACTCAAGGGCTATGTTTCTGACACAATTTCAAGTTCATGCAGTTTACGAGTCCTCAATCTCAATGGAAATCTCTTGGAAGGTGTTATCCCAAATACTCTTGCAAATTGCAAGAGTCTACAAGTCTTAAATCTTGGAAACAATTTGTTCGAAGATAGATTTCCGTGCTTCTTAAGAAAGATTTCCACCCTGCGAGTGCTAATTTTGAGGTCAAACAAACTCAATGGTCCTATTGCATGCCCACGTAGCACTAGCAATTGGGAGAAGCTTCACATTATTGATCTAGCCTCCAATAATTTCATTGGTATTCTACCTGGACCAGTTTTGAGAAGCTTGAAACAGATGAAGCAATGTGAGGCCGAATCCCATGAGAAGTATGGGAGTCTATTTTTTGACATGTTTGATAATGTTGACACCGTGAGTTTCACTAGTTTGTTGTTATTTTTCAACAAATTTCTAGTAATAAAATTGCACAAATTGTTGGAAACTGAACCTTATAATGTGGTTGACCACATATTGTCTTATTATGCCATTTCTAACGAATATGGTTGTCGCTACTTGGATTCAGTTACAGTTGTGAACAAGGCTTTGCAAATGAAGTTGATCAAAATTCCCACCATCTTCACTTCCTTGGATCTCTCCTCCAACCATTTTGAAGGTTCAATACCTGAAGAACTTGTGAGTTTGAGAGCACTGAATGTTCTTAACCTGTCACATAATACTTTGTCAAACCATATCCCCTCATCGATTGGAAATCTGATGAATGTAGAATCCTTGGACTTGTCAAATAATAGTTTGAGCGGTGAAATCCCTCATGAGCTTGTTAGTTTAAACTTTCTAGAATATTTGAATCTTTCATTTAACCATTTGTGGGGGGAAATTCCCACAGGTGCTCAAATGCAAACATTTAGTTCAAGTTCTTTTGAAGGCAATGAAGGATTATGTGGGCCACCGCTAGAAGATTGCACCAATGATAGAAGGAGACATTCATCTCCTACACCAGTACATGAAATGTATGGATCAACTGATTGGAATTTCTTAAGTGTAGAACTGGGATTTATCTTTGGCTTTGGAATTGTTATCCTGCCCCTTATTTTGTTTGAGTGTTGGAGGCTTTTGTATTGGAAGCATGTCGATGACCTACTTTACAAGCTTGTTCCTCAACTGGGTTTTTTTTATGAACACCATAGAGGACAAACGTACAGATCTCTAAGGTGGACTGGATAG 3324 0.3748 MRIDQIFSHIFIPLCMIFLNINLNVATCHSLHHQQFLLLHLKENLLFNPATSKKLVYWNQSSDCCQWNGVTCSMGGVIGLDLSEEFIFGGLDNSSLFELEYLQRLNLAYNDFNSSIPLKFGKLKSLRYLNLSNAGFYGQIPSEISHLTNLIILDLSTPLTSQPILKLQNSNIAMFLQNLEKITELYLDGVKVSVEGKEWCHALSSLQKLEVLSMSSCNISGPIDSSLATLVKLSVIRLSLNNISSSVPKFFANFSNLNVLEISSCSLSGHFPKGIFQLQTLKVLDISNNRDLHGVLPNFLPDAVLHTMNLSNTNFSGKLPGAISNLKQLSLLDASNCQLIDTLPISLSELTQLVHLDLSFNRFTGPLPSFKMVKNLRYLSIFHNNLTGVITTTHFEGLENLLSINLGDNYLNGNIPMSLFTLLSLQELTLSHNQLDGLLDEFLNASSSKLELIDLSNNILHGPIPVSIFHIKGLRFLQLSDNEFNGTMRLDMVHRLQNLHTLGLSHNKLSVDVTLDDHDISSFPSMKYLLLGSCNLGKFPGFLRNQSQINALDLSNNHIEGKIPNWIWRFKYLIYLNLSNNFLTNMEGPFDDLNSNLYILDLHSNQLTGSVPTFTKYAAHLDYSNNKFSTAPLDMDKYVPFLYFLSLSENNFQGKIPESFCNLSSLRLLDLSYNSFNDLIPKCLMRRNSTLRVLNLAENKLKGYVSDTISSSCSLRVLNLNGNLLEGVIPNTLANCKSLQVLNLGNNLFEDRFPCFLRKISTLRVLILRSNKLNGPIACPRSTSNWEKLHIIDLASNNFIGILPGPVLRSLKQMKQCEAESHEKYGSLFFDMFDNVDTVSFTSLLLFFNKFLVIKLHKLLETEPYNVVDHILSYYAISNEYGCRYLDSVTVVNKALQMKLIKIPTIFTSLDLSSNHFEGSIPEELVSLRALNVLNLSHNTLSNHIPSSIGNLMNVESLDLSNNSLSGEIPHELVSLNFLEYLNLSFNHLWGEIPTGAQMQTFSSSSFEGNEGLCGPPLEDCTNDRRRHSSPTPVHEMYGSTDWNFLSVELGFIFGFGIVILPLILFECWRLLYWKHVDDLLYKLVPQLGFFYEHHRGQTYRSLRWTG 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02242 1107 Pfam Leucine Rich Repeat 665 684 IPR001611 GO:0005515
Phco3g02242 1107 Pfam Leucine rich repeat 930 989 IPR001611 GO:0005515
Phco3g02242 1107 Pfam Leucine rich repeat 690 748 IPR001611 GO:0005515
Phco3g02242 1107 Pfam Leucine rich repeat 375 435 IPR001611 GO:0005515
Phco3g02242 1107 SUPERFAMILY L domain-like 29 339 - -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 304 446 IPR032675 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 447 490 IPR032675 -
Phco3g02242 1107 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Phco3g02242 1107 SMART LRR_typ_2 496 522 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 928 952 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 123 147 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 350 372 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 230 253 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 713 735 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 976 999 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 422 445 IPR003591 -
Phco3g02242 1107 SMART LRR_typ_2 663 686 IPR003591 -
Phco3g02242 1107 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 360 1020 IPR046956 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 27 114 IPR032675 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 115 160 IPR032675 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 161 303 IPR032675 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 588 845 IPR032675 -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 884 1025 IPR032675 -
Phco3g02242 1107 SUPERFAMILY L domain-like 621 1020 - -
Phco3g02242 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 301 390 - -
Phco3g02242 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 590 829 - -
Phco3g02242 1107 SUPERFAMILY L domain-like 272 612 - -
Phco3g02242 1107 Gene3D Ribonuclease Inhibitor 491 587 IPR032675 -
Phco3g02242 1107 FunFam Tyrosine-sulfated glycopeptide receptor 1 873 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02242 Phco-Chr3 48775689 48779012 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02242 3 48775689 48779012 Phco1g01582 1 53251275 53254598 PCT