Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02221 ATGGGTTCTCACCAACAAGAACCATGGCTATTGGAGAACGGAAACCCGAAGGTGTTGACCAGGGAAATGAGACATGGCCGCACTGCGCACAGCAAGTCCTCCAACTCACTTCGCAAGAAGTCTGATCGCACTCTTGTCTCCAAGGTTCCCTGTGCTACTCTCCGAAACGTGCTTCTCAACTTGCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGCTGCCATTGTGGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTTTTTATGTTGAGCTTAATTGGACTTACCCCACTTGCTGAACGTGTGAGCTTCATCACTGAACAAGTAGCCTTCTTCACAGGTCCCACAGTTGGAGGACTTCTGAACGCCACGTGTGGGAATGCTACTGAGCTCATAATTGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTTTTCTCTGTTGGGATCTATTCTTTCAAACCTTCTTCTGGTTCTTGGCACCTCTCTATTGTGTGGTGGCATTGCAAATGTTGGAGTGGAACAAAAATATGATAGAAGACAAGGAGATGTGAACTCACTTATGCTGTTGTTGGCATTGTTGTGCTACTTACTTCCTATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACTGTTGACCCTTCACTCCATTTGTCAAGAGCTTCTAGCATTGTGATGCTGATTGCATATGCTGTTTACATTATCTTTCAACTGTGGACACACAGGCGGTTATTTGAAGCTGAAGATGAGGATGAAGATGACAACAATGGTTCAGATGAACAAGCTGTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTATTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTGCCGATAGTTGGCAATGCGGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTATGTGTGATCGTTGCTTGGATAATGGGTATCAAAATGGATTTGAACTTCAATCTCTTAGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTATTCTCCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTACAAAGAACACCCTTTATGCTTAGTGGGATTGGCATAATTTTTTCTTTTCCCGAGATGAAGAATGGTGTGGCATCCAAACCCAAAATCAAATTCAATGGATTGGTTATTGTTTCATTCTGA 1389 0.4406 MGSHQQEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRKKSDRTLVSKVPCATLRNVLLNLQEVILGTKLSILIPAIPAAIVAEYCGFGRPWVFMLSLIGLTPLAERVSFITEQVAFFTGPTVGGLLNATCGNATELIIAIFALSSNKIAVVKFSLLGSILSNLLLVLGTSLLCGGIANVGVEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYAVYIIFQLWTHRRLFEAEDEDEDDNNGSDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGIKMDLNFNLLETGSVALAIIVTSFTLQDGTSHYMKGLILLLCYIVIGACFFVQRTPFMLSGIGIIFSFPEMKNGVASKPKIKFNGLVIVSF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02221 462 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 427 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phco3g02221 462 FunFam Vacuolar cation/proton exchanger 267 423 - -
Phco3g02221 462 Gene3D - 264 422 IPR044880 -
Phco3g02221 462 Gene3D - 121 263 IPR044880 -
Phco3g02221 462 FunFam Vacuolar cation/proton exchanger 121 265 - -
Phco3g02221 462 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016020|GO:0055085
Phco3g02221 462 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Phco3g02221 462 NCBIfam calcium/proton exchanger 74 422 IPR004798 GO:0006816|GO:0015369
Phco3g02221 462 NCBIfam calcium/proton exchanger 56 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02221 Phco-Chr3 48572099 48575324 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02221 3 48572099 48575324 Phco3g02221 3 48572099 48575324 ECH
Phco3g02221 3 48572099 48575324 Phco1g01284 1 23008145 23011893 PCT