Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01284 ATGGAGGTGATGGAGAATGGTGGTGCAAACTTGAAGGGGTTGAGCAAGGAGATGAGACATGGAAGAACAGCACATAACATGTCATCTTCTTCGTTGCGCAAGAAATCTGACCTAACTCTTGTGTCTAAGATTAGTTTTGGCCCTCTGAAAATCCTGCTGCTGAACACTCAAGAGGTTATTTTAGGAACCAAGCTTTCTATTCTCTTCCCTGCTGTTCCCATTGCCATTATTGCTCACTGCTATGGATTTGCAAAACCTTGGGTTTTTGGATTGAGCTTACTGGGGCTTACCCCACTTGCTGAAAGACTCAGTTTCTTGACAGAACAGATTGCTTGTTACACTGGTCCCACAGTGGGAGGACTTATGAATGCAACATGTGGGAATACTACAGAGCTCATTATAGCAATTTTTGCCCTTAGCCAAAACAACATTGCTTTGGTCAAATATTCTCTCCTGGGTTCTATAATTTCTAACCTTCTTCTGGTTCTTGGAACCTCTCTAATCTGTGGAGGCCTTGTAAATCTTAGGCAGGAACAGAAATATGATAGAAGACAGGCAGATATGAACTTGCTTATGTTGTTTGTGGCATTGCATTGTCACTTGCTGCCAATGCTGTTCCATTATGCTCATGCCTCAGAAGGTGTCGCTGCAGAATCATCTCTGCAGTTGTCAAGAGCTGCTAGCGTTATTATGGTGATAGCATATTTTGCCTACCTTGTGTTCCAGCTGCGGACTCACAGACAACTCTTTGAAGACCCAGTTGAAAATGAAGAAGAGGGTGACAATGATTCAGATGAAGCAGTGATAGGATTCTGGAGTGGGTGTGTTTGGCTGGTTGGGATGACTGTAATCATTGCAGTGCTGTCTGAATATGTGGTACAAACAATTGAGGATGCGTCTAATTCATGGGGTTTGTCTGTTAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGCAATGCAGCTGAACACGCTGGAGCAATCATATTTGCTTTCAAGAACAAACTGGACATCTCCTTGGGTGTTTCTTTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCCCTTTGTGTGATTGTATCTTGGATTCTGGGAATAGAAATGGACCTCAACTTCAACCTCCTAGAATCAGGTTCTCTTACTTTGGCAATAATAACCACAGCCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTGCTCTTCCTGTGCTACATTGTTATTGGGGCATGCTTTTTCGTACAAAAAACACCCTCCAATAAAGAGTTGCAGCATCCAAACTTTGAACAAGATTCAATGGATTTGTTATTTGTTCATTTGTCATCCACAGCCAAAAAGCTGAAGAAGTTTTGCATGCAGTAG 1374 0.4243 MEVMENGGANLKGLSKEMRHGRTAHNMSSSSLRKKSDLTLVSKISFGPLKILLLNTQEVILGTKLSILFPAVPIAIIAHCYGFAKPWVFGLSLLGLTPLAERLSFLTEQIACYTGPTVGGLMNATCGNTTELIIAIFALSQNNIALVKYSLLGSIISNLLLVLGTSLICGGLVNLRQEQKYDRRQADMNLLMLFVALHCHLLPMLFHYAHASEGVAAESSLQLSRAASVIMVIAYFAYLVFQLRTHRQLFEDPVENEEEGDNDSDEAVIGFWSGCVWLVGMTVIIAVLSEYVVQTIEDASNSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVSLGSATQISMFVVPLCVIVSWILGIEMDLNFNLLESGSLTLAIITTAFTLQDGTSHYMKGLVLFLCYIVIGACFFVQKTPSNKELQHPNFEQDSMDLLFVHLSSTAKKLKKFCMQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01284 457 Coils Coil 444 457 - -
Phco1g01284 457 FunFam Vacuolar cation/proton exchanger 262 418 - -
Phco1g01284 457 NCBIfam calcium/proton exchanger 70 417 IPR004798 GO:0006816|GO:0015369
Phco1g01284 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 422 IPR004713 GO:0006812|GO:0008324|GO:0016020
Phco1g01284 457 Pfam Sodium/calcium exchanger protein 86 243 IPR004837 GO:0016020|GO:0055085
Phco1g01284 457 Pfam Sodium/calcium exchanger protein 276 412 IPR004837 GO:0016020|GO:0055085
Phco1g01284 457 Gene3D - 116 259 IPR044880 -
Phco1g01284 457 Gene3D - 260 418 IPR044880 -
Phco1g01284 457 NCBIfam calcium/proton exchanger 52 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01284 Phco-Chr1 23008145 23011893 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02221 3 48572099 48575324 Phco1g01284 1 23008145 23011893 PCT