Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02219 ATGGGCGATTTTAACCTCGCCCTGGTGATCGTGGCAGTGGTGGTCTGCGTGATCGTGTTCCTCGTCAACGTGTACCTCTTGGTCAACTACCAGCATCCCGACGACGCCAACCAGGCCTACTTCCCGAAATTCGTCGTCGTTTTGGGCCTCTCCATCGCCGCCATCTCCATCCTCATGCTCCCCGCCGACGTGGCGAACCGCCAAGCCTGTCGCCACGCGATCTACAACGGGGCGTGCAACCTCACGCTCCCCATGAAGGACCTCTGGCTCGCCGTTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCATTCGCCATGTTCTACTACGAGGGCGACCTTGACAAGACTGTGGGGAAGAGGGTTAAGAGTGCGTTATTGTGGATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGTATTTTATACGGGCTGGTTGGAAAGGTGGACTTTACTGTCAGGCATCTCTCTTCATCCACAACTGCATTTCCTAGCACTTGGACATTCAATAGTAATGAACAATGTATTGGAAGTGGTGTCCATCAGTGCTCAGCTTACTCTGCCAGTCCTTCCTCAGAGAAAACATGGACCATACGTAGTACCTTCCCAGAATATGTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTATATTTGGCGGTGTTGGTATTGCATGTCTTCCATTAGGACTTATATTTTCATTTTTGCGGCGTCCGAAGGCTGTTATCACTCGCTCACAGTATATCAAGGAAGCCACTGAACTAGGTAAAAAAGCAAGAGAATTAAAGAAAGCAGCTGAGGCTCTGCATCAGGAAGAAAAAGGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGGAGTTGTTTCAATTAGAAGAAGACGTAAAACTTCTTGAAGAGATGTATCCTCAAGGGGAAAAGGCTGAGACAACATGGGCACTAACAGTTCTTAGTTATCTGGCAAAAATTGTTTTCGGAGTTTTAGGGTTGATTGTTTCTGTGGTGTGGATCATTCATATTATCATCTACCTATTAATTGATCCACCACTTTCTCCTTTCCTGAATCAAGTTTTCATCAAGCTAGATGATGTCTGGGGTCTTCTCGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTTATCACTATACATCCCATGAAGTGGGGAGCAACTCTTATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTCTTCCATTAGTGTGATCCAGTTCTGCTCCACAGCCTTTGCCTACTACGCTCAAGCAACTGCAGCCCAAGAAATATTTGGCCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTATACAAGTACAATGTATTCCAAATTGCCTTTGTTATTTTAGCTGGATTGACCTTTGTGTATTACGCTGTGTTTGGATGGCGAAGAAAAAAACCTAGTGGCAGGTTCCAATTATCTACATAA 1530 0.4569 MGDFNLALVIVAVVVCVIVFLVNVYLLVNYQHPDDANQAYFPKFVVVLGLSIAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDLDKTVGKRVKSALLWMVTTAIVCALVLGILYGLVGKVDFTVRHLSSSTTAFPSTWTFNSNEQCIGSGVHQCSAYSASPSSEKTWTIRSTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFLRRPKAVITRSQYIKEATELGKKARELKKAAEALHQEEKGGSKGRKFRKNVKEVEKELFQLEEDVKLLEEMYPQGEKAETTWALTVLSYLAKIVFGVLGLIVSVVWIIHIIIYLLIDPPLSPFLNQVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLSSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVILAGLTFVYYAVFGWRRKKPSGRFQLST 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02219 509 Coils Coil 256 276 - -
Phco3g02219 509 Pfam LMBR1-like membrane protein 9 290 IPR006876 -
Phco3g02219 509 Pfam LMBR1-like membrane protein 284 487 IPR006876 -
Phco3g02219 509 Coils Coil 283 310 - -
Phco3g02219 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02219 Phco-Chr3 48545544 48550251 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02219 3 48545544 48550251 Phco3g02219 3 48545544 48550251 ECH
Phco3g02219 3 48545544 48550251 Phco1g01286 1 23136340 23141359 PCT