Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02049 ATGGCATCGTTGGGATCTTCTTCTTCTTCATTCTGGTGCTACCGATGCAATCGCGTCGTTAGGGTTTCCCTCGCTACAGAAGGCCAGCCAGATCCTATCATTCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAAGAGCTCCACACGCCTCCCCACTCCCGTCGATCCACGCGCGCCGGGTCGCCCTTCAATCCCGTCATCATGCTGCGCGGCGGCGGCGGGAACGGAAACGAAAACGAAAACGCAAACGCCAACGAAAACGACGTCGCCTCGGGGAACTTCGAGCTCTACTACAACGAGGGGGTTTCGGGTCCGGGCCCTCTACGCCCGCTGCCAGCCGGCGTGACCGACTTTCTGATGGGCTCGTCGGGCTTCGACCACTTGCTGGACCAGCTGGACGGCACCGCGGTGCGCCTCGACCGGGCGGCGTCGAAGGCCGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCGAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAATTTTCAAGTGGATTGCGACGCACGTGAGATGCCGTGCGGGCACGTATATCACTCGGAGTGCATCGTGCCGTGGCTCTCCGTGCGGAACTCGTGCCCTGTGTGCCGGCGCGTGGTTCCTTCCGATGAAGTCCATGATAACAATTCGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGAGGTAGAGAACTCCCCCTCGTGTACACGGAGATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCGAGGAGAGTCTCCTGGGATTCGTCTATTGGTAGGTCTAGGGAGAGTAGGGGGTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATTTCGGAAGAGTTAGGAGTTCCTTTTCTCGTGGAACGAGAAACTTGCGTGTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 987 0.5836 MASLGSSSSSFWCYRCNRVVRVSLATEGQPDPIILCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIMLRGGGGNGNENENANANENDVASGNFELYYNEGVSGPGPLRPLPAGVTDFLMGSSGFDHLLDQLDGTAVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVHDNNSMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNLRVNGRSRSATTIFSRFRSRSRF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02049 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 214 IPR013083 -
Phco3g02049 328 SUPERFAMILY RING/U-box 147 214 - -
Phco3g02049 328 FunFam E3 ubiquitin-protein ligase RNF181 134 214 - -
Phco3g02049 328 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Phco3g02049 328 Pfam Ring finger domain 166 208 IPR001841 -
Phco3g02049 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 210 - -
Phco3g02049 328 Pfam zinc-ribbon 10 47 IPR039525 GO:0061630
Phco3g02049 328 Pfam Protein of unknown function (DUF1117) 222 321 IPR010543 -
Phco3g02049 328 SMART ring_2 167 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02049 Phco-Chr3 46068516 46069502 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02049 3 46068516 46069502 Phco3g02049 3 46068516 46069502 ECH
Phco2g02676 2 56427087 56428403 Phco3g02049 3 46068516 46069502 ECH