Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02676 ATGGCCTCCAATATCCTCCTTCTCCATCTTCCTTCTCTTACAATTACCCTTTTCACTGTTTTTCTCCAAATCCAAACAACAACTTCTTCACCCCAAGGCCCTCTCATATTGCCTCTAATATCCCAGACACTCTCACATGGGTTTGTTTCTGTTCCAAGTCCTTCTTCACGTAAGCTCTCATTCCACCACAACGTCACCTTAACCGTTTCACTCACCGTAGGCACGCCCCCACAGAGCGTTACCATGGTCCTCGACACAGGCAGCGAACTCTCGTGGCTCCACTGTAAGAAAAACCAAAACATTAACTCAATCTTCAACCCACAACTCTCTTCCTCGTACACCCCAACACCCTGCTCCTCACCTATTTGCACCACCCGAACCCGAGATTTCCCCATACCCGTTTCCTGCGACCCGATAAAGCTCTGCCACGCCACCGTCTCATACGCTGACGCCACCTCCTTAGAGGGGAACCTCGCCACTGACACGTTCTCCTTATCCGGTTCAGGTCAACCCGGTATTATTTTCGGGTGTATGGACTCCGGGTTCAGCTCCAACACCAAGGAAGATTCCAAAACAACCGGGTTAATGGGCATGAACCGCGGGTCGCTCTCGTTTGTGACGCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGTCACGATGCCTCCGGCGTGTTACTCTTCGGCGACGCGAAACTCACATGGCTGGGTCCTTTGAAGTACACGCCGCTGGTGAAGATGAATACTCCATTACCCTACTTCGACCGGGTCGCATACACGGTTCGGTTGGTGGGTATTCGGGTCGGTTCAAAGCCATTGGAGGTGCCCAAGTCAATTTTCGCGCCGGACCATACTGGGGCGGGACAGACAATGGTGGATTCGGGTACCCAATTCACTTTCCTTCTCGGGTCGGTTTACACTGCTCTAAAGAACGAGTTTTTGGAACAGACGAAAGGGGTGCTGACCCTTTTGGAAGATAATAATTTTGTGTTTGAAGGGGCGATGGATTTGTGTTTTGGGGTTAGAGGGGGTGTTGTGCCGACGGTTCCCGCCGTGACAATGGTGTTTGAGGGGGCGGAGATGGGTGTGTCCGGGGAGAGGCTACTGTATCGAGTGGGTGATGACGTGGCAAAGGGAAAAGATGTGTATTGTTTGACATTTGGGAATTCAGATTTGTTGGGAATTGAGGCTTATGTGATTGGGCACCATCATCAGCAGAATGTGTGGATGGAGTTTGACTTGGTCAACTCAAGAGTTGGATTTGCTGACACAAGGTGTGAACTTGCGAATAGAAGACTTGGCATGAGTCCTTAG 1317 0.508 MASNILLLHLPSLTITLFTVFLQIQTTTSSPQGPLILPLISQTLSHGFVSVPSPSSRKLSFHHNVTLTVSLTVGTPPQSVTMVLDTGSELSWLHCKKNQNINSIFNPQLSSSYTPTPCSSPICTTRTRDFPIPVSCDPIKLCHATVSYADATSLEGNLATDTFSLSGSGQPGIIFGCMDSGFSSNTKEDSKTTGLMGMNRGSLSFVTQMGFPKFSYCISGHDASGVLLFGDAKLTWLGPLKYTPLVKMNTPLPYFDRVAYTVRLVGIRVGSKPLEVPKSIFAPDHTGAGQTMVDSGTQFTFLLGSVYTALKNEFLEQTKGVLTLLEDNNFVFEGAMDLCFGVRGGVVPTVPAVTMVFEGAEMGVSGERLLYRVGDDVAKGKDVYCLTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELANRRLGMSP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02676 438 PANTHER ASPARTYL PROTEASE-RELATED 18 430 IPR001461 GO:0004190|GO:0006508
Phco2g02676 438 CDD pepsin_A_like_plant 66 427 IPR034161 -
Phco2g02676 438 Gene3D Acid Proteases 237 432 IPR021109 -
Phco2g02676 438 FunFam Aspartic proteinase PCS1 235 431 - -
Phco2g02676 438 Pfam Xylanase inhibitor C-terminal 259 423 IPR032799 -
Phco2g02676 438 FunFam Aspartic proteinase PCS1 58 231 - -
Phco2g02676 438 SUPERFAMILY Acid proteases 67 427 IPR021109 -
Phco2g02676 438 Gene3D Acid Proteases 60 230 IPR021109 -
Phco2g02676 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Phco2g02676 438 ProSiteProfiles Peptidase family A1 domain profile. 67 423 IPR033121 -
Phco2g02676 438 Pfam Xylanase inhibitor N-terminal 69 231 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02676 Phco-Chr2 56427087 56428403 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02676 2 56427087 56428403 Phco2g02676 2 56427087 56428403 ECH
Phco2g02676 2 56427087 56428403 Phco3g02049 3 46068516 46069502 ECH