Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01860 ATGGAAGAAGGTTTCGACATTCCCGGCGGCGAGGAAATGGATCTCGGCGAAGTCAAAGTTGGAGAGGAGAGGGAGATCGGCTCCAACGGCCTCAAGAAGAAGCTCCTTAAGGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTTAAAGTTCATTACACTGGGACTTTGCTCGACGGAACGAAGTTCGATTCCAGCCGTGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAGGTAATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAAAATGCCATTTTTACCATCCCTCCTGAGCTAGCATATGGTGAATCTGGTTCCCCTCCAACGATACCTCCTAATGCTACACTCCAATTTGACGTTGAGCTTCTTTCATGGACTAGTGTAAAGGACATATGCAAGGATGGTGGTATATTTAAAAAGATACTTACCGAGGGAGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGCTCATCTAGAAGATGGAAAACTGGTAGGAAAGTCTGATGGAGTGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGGTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGCACAAGGTGAGGAAGGTGCTGTTCCACCAAATGCATCATTGGAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCGGAAGTAACTGAGGATAAGAAGGTCATAAAGAAGATTGTCAAGGAAGGGGAAGGATATGAGCGTCCAAACGAGGGGGCCAATGTGAAAGTGAAACTAATTGGTAAGCTTCAAGATGGTACTGCCTTTTTGAGTAAGGGCCATGATGGAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGCGAGGTTGCATTGTTGACCATTGAACCCGAGTATGCTTTTGGTTCATCAGAGTCTCAGCAGGAGTTGGCAGTGGTTCCTCCTAACTCGACTGTGTATTTTGAAGTTGAGCTAGTGTCATTTGAGAAAGAGAAAGAGTCCTGGGATCTGAATACCGAAGAGAAACTTGAAGCTGCCGGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAATATGCAAGAGCATCCAAAAGATATGAAAAGGCTGTGAAGCACATAGAATATGATTCTGCCTTTGGCGAGGAGGAGAAAAAGCTGGCGAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTATAAAGAAGCAGAGAAATTGTCTACCAAGGTGTTAGACCTTGAGAGTACAAACGTGAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGCTGGCTGACTTGGATTTGGCTGAACTTGACCTGAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATCTCAAGTTGGAGTACAAGACTCTCAGGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGAAATTTTATGGAAATATGATCAACAAATTGACAAAGATTGGTTCCTGA 1635 0.4373 MEEGFDIPGGEEMDLGEVKVGEEREIGSNGLKKKLLKEGQGWETPEVGDEVKVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEAHLEDGKLVGKSDGVEFTVREGHYCPALSKAVKTMKKGEKVVLTVKPQYGFGEKGKPAQGEEGAVPPNASLEITLELVSWKTVSEVTEDKKVIKKIVKEGEGYERPNEGANVKVKLIGKLQDGTAFLSKGHDGEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIEPEYAFGSSESQQELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKHIEYDSAFGEEEKKLAKTLKVACNLNNAACKLKLKDYKEAEKLSTKVLDLESTNVKALYRRAQAYMQLADLDLAELDLKKALEIDPNNRDLKLEYKTLREKVKENNRKEAKFYGNMINKLTKIGS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01860 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 253 IPR001179 GO:0003755
Phco3g01860 544 SUPERFAMILY TPR-like 380 537 IPR011990 GO:0005515
Phco3g01860 544 Gene3D - 23 139 IPR046357 GO:0003755
Phco3g01860 544 Coils Coil 507 527 - -
Phco3g01860 544 FunFam Peptidylprolyl isomerase 379 534 - -
Phco3g01860 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 145 256 - -
Phco3g01860 544 FunFam Peptidylprolyl isomerase 254 376 - -
Phco3g01860 544 FunFam Peptidylprolyl isomerase 140 253 - -
Phco3g01860 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 275 371 IPR001179 GO:0003755
Phco3g01860 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 250 IPR001179 GO:0003755
Phco3g01860 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Phco3g01860 544 Gene3D - 254 375 IPR046357 GO:0003755
Phco3g01860 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 374 IPR001179 GO:0003755
Phco3g01860 544 Pfam Tetratricopeptide repeat 474 507 IPR001440 GO:0005515
Phco3g01860 544 SUPERFAMILY FKBP-like 257 391 - -
Phco3g01860 544 SUPERFAMILY FKBP-like 140 256 - -
Phco3g01860 544 Gene3D - 140 253 IPR046357 GO:0003755
Phco3g01860 544 SUPERFAMILY FKBP-like 23 147 - -
Phco3g01860 544 Gene3D Tetratricopeptide repeat domain 377 534 IPR011990 GO:0005515
Phco3g01860 544 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Phco3g01860 544 SMART tpr_5 391 424 IPR019734 GO:0005515
Phco3g01860 544 SMART tpr_5 440 473 IPR019734 GO:0005515
Phco3g01860 544 SMART tpr_5 474 507 IPR019734 GO:0005515
Phco3g01860 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Phco3g01860 544 FunFam Peptidylprolyl isomerase 21 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01860 Phco-Chr3 42607611 42611820 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01860 3 42607611 42611820 Phco1g01720 1 55408033 55413455 PCT