Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01720 ATGGACGACGATTTCGACGTGCCGCCGGCGGATTCCATGAACGACGACTTCAACTTTGGCGGCGACGGCGGCGACCTCGAAACTCCTGTTCTCAAGGTCGGCGAGGAGAAGGAAATTGGGCAACAGGGCTTGAAGAAGAAACTCCTGAAGGAAGGTGAAGGATGGAATACTCCTGAAGCTGGTGACGAGGTTCAAGTGCACTACACTGGGACGTTGCTTGATGGCACCATGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTGTAACGATGAAGAAAGGTGAAAATGCCCTTTTTACCATCCCAGCGGAGCTAGCATACGGTGAATCTGGTTCTCCTCCAACTATTCCCCCCAATGCAACTCTTCAATTTGACGTGGAGCTATTGTCTTGGACTAGTGTGAAGGACATATGTAAAGATGGAGGTTTATTTAAGAAGATAGTTACTGAGGGGGAAAAATGGGAGAATCCCAAGGATCTTGATGAAGTTTTAGTGAAATACGAAGCACGACTTGAAGATGGGACTCTAGTAGCAAAATCTGATGGAGTGGAGTTCACAGTCGAAGATGGTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGAGTGTGAAGCCTCAATATGGATTTGGTGCAAAGGGTAAGCCAGCACATGGTGACGAAGGTGCAGTTCCACCAAATGCATCATTGGAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGATGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGGTATGAGCGTCCAAATGAGGGGGCAGTTGTGAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAGAAGGGTCATGATGAGGAAGGGGAGCTGTTTGAATTCAAAACTGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTTTTGACTATGAAGAAGGGTGAGGTGGCATTGTTAACTATTGCGCCTGAGTATGGTTTTGGCTCATCAGAGTCTCAACAGGAACTTGCTGTGGTTCCTTCTAACTCCACTTTGTATTACGAGGTTGAGCTAGTATCGTTTGAGAAGGAAAAAGAGTCATGGGACATGACCACACCAGAGAAGATTGAGGGTGCTGGTAAGAAGAAAGAAGAAGGAAATGCATTATTTAAAGCTGGTAAATATGGAAAAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAGTATGATACCTCCTTCAGTGAAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTTGCCTGTAATCTAAATAATGCAGCATGCAAGTTGAAGCTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGGTACTGGAACTTGAGAGCACTAACGTGAAGGCTCTATATAGAAGGGCCCAGGCATACATCCAGTTGGCTGATTTTGATTTGGCTGAATTTGATATTAAGAAAGCACTTGAGCTCGACCCTGACAACAGGGAAGTGAAGCTTGAGTACAAGACCTTGAAGGAAAAGATGAAGGAATACAACAAAAAACAGTCAAAATTTTATGGAAATATGTTCAACAAACTGCATAAGCTAGATTCTTTGGACAATAACAAAGCAGAGTCGAAGGATGCCCAACCCATGAATATCGACAGCAAGGCATAA 1734 0.4319 MDDDFDVPPADSMNDDFNFGGDGGDLETPVLKVGEEKEIGQQGLKKKLLKEGEGWNTPEAGDEVQVHYTGTLLDGTMFDSSRDRGTPFSFTLGQGQVIKGWDQGIVTMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVTEGEKWENPKDLDEVLVKYEARLEDGTLVAKSDGVEFTVEDGYFCPALSKAVKTMKKGEKVILSVKPQYGFGAKGKPAHGDEGAVPPNASLEITLELVSWKTVSDVTDDKKVIKKILKEGEGYERPNEGAVVKLKVIGKLQDGTLFLKKGHDEEGELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYGFGSSESQQELAVVPSNSTLYYEVELVSFEKEKESWDMTTPEKIEGAGKKKEEGNALFKAGKYGKASKRYEKAVKFIEYDTSFSEEEKKSSKTLKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADFDLAEFDIKKALELDPDNREVKLEYKTLKEKMKEYNKKQSKFYGNMFNKLHKLDSLDNNKAESKDAQPMNIDSKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01720 577 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
Phco1g01720 577 FunFam Peptidylprolyl isomerase 392 547 - -
Phco1g01720 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Phco1g01720 577 Gene3D - 267 388 IPR046357 GO:0003755
Phco1g01720 577 FunFam Peptidylprolyl isomerase 267 389 - -
Phco1g01720 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 387 IPR001179 GO:0003755
Phco1g01720 577 PANTHER PEPTIDYLPROLYL ISOMERASE 36 151 - -
Phco1g01720 577 SMART tpr_5 487 520 IPR019734 GO:0005515
Phco1g01720 577 SMART tpr_5 404 437 IPR019734 GO:0005515
Phco1g01720 577 SMART tpr_5 453 486 IPR019734 GO:0005515
Phco1g01720 577 FunFam Peptidylprolyl isomerase 153 266 - -
Phco1g01720 577 SUPERFAMILY FKBP-like 270 405 - -
Phco1g01720 577 SUPERFAMILY TPR-like 393 551 IPR011990 GO:0005515
Phco1g01720 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Phco1g01720 577 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Phco1g01720 577 Gene3D - 153 266 IPR046357 GO:0003755
Phco1g01720 577 Gene3D - 34 152 IPR046357 GO:0003755
Phco1g01720 577 FunFam Peptidylprolyl isomerase 34 152 - -
Phco1g01720 577 SUPERFAMILY FKBP-like 154 268 - -
Phco1g01720 577 SUPERFAMILY FKBP-like 36 162 - -
Phco1g01720 577 Coils Coil 520 540 - -
Phco1g01720 577 Pfam Tetratricopeptide repeat 487 520 IPR001440 GO:0005515
Phco1g01720 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 384 IPR001179 GO:0003755
Phco1g01720 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 56 146 IPR001179 GO:0003755
Phco1g01720 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 263 IPR001179 GO:0003755
Phco1g01720 577 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01720 Phco-Chr1 55408033 55413455 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01860 3 42607611 42611820 Phco1g01720 1 55408033 55413455 PCT