Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01834 ATGCCTCCAAATGTAGACTATTTGTCGTCTGTGGCAAAACAAGCGGAGCAGCTTCGAGTGGTTGGCAACAACTACTTCAAGAAAGAGCGTTTTGGAGCTTCCATTGACGCTTACACTGAGGCAATTGCACTGTGCCCTGATGTTCCCGTGTATTGGACCAACCGCGCTCTCTGCCATCTCAAGCGCAATGATTGGACCAGAGTTGAGGAAGACTCTCTTCAAGCTATGAAGCTTGACAACAATTTGGTTAAGGCCCACTATTTGTTAGGTCTTTCATTGGTACAGAGACAAGAGTTCGCTAAAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTACAGTGCTTGAAAGAAGCTTGTGAGTATGCTCTAAAGGAAAAACATTTTCTCGAAGTCCCCCACATGGAAGGATTTGTAGAAGATAATACTGCCCATTTAGAACAATTAGAGGCTTTAGGAAGAGTGTTTGATAAAGTTGCAGAAAATGACATGCCTACCGAGGTGCCAGATTATCTGTGCTGTAGAATCACACTTGATATTTTTTGTGATCCTGTCATTACCCCAAGTGGCCTTACATACGAGAAGACAGTAATTATCAACCATCTTGAGAAGGTGGGTATGTTTGATCCAGTCACTCGAGATCCTCTTGATCCATCACAGCTAATACCAAACCTAGCCATAAAGCAAGCAGTTGAAGCATTCTTGGATAAACATGGGTGGGCATACAAAGATATATTAACAAAAAGCTTTTAA 861 0.4228 MPPNVDYLSSVAKQAEQLRVVGNNYFKKERFGASIDAYTEAIALCPDVPVYWTNRALCHLKRNDWTRVEEDSLQAMKLDNNLVKAHYLLGLSLVQRQEFAKGILELKKALDLDRGSHPKGQMVEEIWQELAKAKYLEWEHSYTKRSWELQCLKEACEYALKEKHFLEVPHMEGFVEDNTAHLEQLEALGRVFDKVAENDMPTEVPDYLCCRITLDIFCDPVITPSGLTYEKTVIINHLEKVGMFDPVTRDPLDPSQLIPNLAIKQAVEAFLDKHGWAYKDILTKSF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01834 286 SUPERFAMILY TPR-like 12 134 IPR011990 GO:0005515
Phco3g01834 286 SMART tpr_5 15 48 IPR019734 GO:0005515
Phco3g01834 286 SMART tpr_5 83 116 IPR019734 GO:0005515
Phco3g01834 286 SMART tpr_5 49 82 IPR019734 GO:0005515
Phco3g01834 286 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Phco3g01834 286 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Phco3g01834 286 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Phco3g01834 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
Phco3g01834 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Phco3g01834 286 Gene3D Tetratricopeptide repeat domain 10 145 IPR011990 GO:0005515
Phco3g01834 286 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Phco3g01834 286 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Phco3g01834 286 SUPERFAMILY RING/U-box 197 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01834 Phco-Chr3 42121254 42124564 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01834 3 42121254 42124564 Phco1g01773 1 57141532 57148846 PCT