Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01806 ATGTCTGGTCACTGGGGTATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACCCAGGTGGAGCTTCGCAGCTTGAAATCACAATTCGTGAGCATGAGGAGGGAGAGTGGAAGGCTTACGGTTGGGGACTTGGCTTCCAAGATGTCAAGGTTGAAGGTTGTGGGAGAGAATCTTAGTGAAAAAGAGAGAGCTTCTTATATTCAGGATTTGTATGAGAACACAGGTGAAGAGGTTGATTTTGAATTGTTTCTTAAGGTTTACTTGAAACTGCAAACTTTTGCAAGTTCTAGGACGGGGAGTAATGCAAAAAACTCATCAGCGTTCCTCAAGGCTGCAACTACCACATTGCTTCACACAATAAGTGAATCTGAGAAGGCATCATATGTTGCACATATAAATAACTATCTTGCAGGAGATGAATTCCTCAAGAAATGCCTTCCTATTGATTCTTCAACCAATGACCTATTTGAAATAGCAAAAGATGGTGTTCTTCTTTGTAAGCTTATTAATGTGGCTGTTCCACGGACCATTGATGAAAGGGCAATCAATACAAAGAGATTACTTAATCCATGGGAAAGGAATGAGAACCACACGCTTTGCCTGAACTCTGCTAAGGCAATTGGATGTACAGTAGTCAACATTGGAACTCAAGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGATTGATTTCACAGATTATTAAGATACAACTATTGGCGGACCTGAACCTGAAGAAAACTCCACAGCTTGTGGAGTTGGTCAATGATAGTGAGGATATGGAAGAGTTGATGAGTCTGGCACCAGAAAAGATTCTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGACTACAAGAAAATAGTCACGAACTTCTCCTCTGATGTTAGGGATGCTGAGGCTTATGCTCACCTTTTAAGTGTTCTTGCACCTGAATACACTAATCCATCCACATTGGCTGTCAAAAATCCTTACGAACGAGCAAAATTAGTTCTTGAACATGCTGATAAGATGGGCTGCAAGAGATACATAACGGCAAGAGATATTGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGGAACGGACTATCAACCCAAGCAAAACAGAGTTCCCTCCTTGAAAACTTGTTAGATGACACACAAGACTCTAGAGAAGAGAGAGCATTTCGCCTCTGGATTAATAGCCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATGTCAGAAACGGGTGGGTACTTTTGGAGACTCTAGACAAAGTGTCACCAGGGATTGTTGATTGGAAGATTGCTAATAAGCCACCTATTAAGTTACCATTTAAAAAAGTAGAGAATTGCAATCAAGTTGTGAAAATAGGGAAACAACTTAAATTTTCCCTTGTAAATATTGCTGGGAATGACATTGTGCAGGGTTATAAAAAATTAATTCTAGCATATTTGTGGCAGTTGATGCGATGCAACATCCTACAACTTCTAAAAAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATGCTGATATTCTGCAATGGGCAAACAGCAAAGCCAGCAGTTCAGGAAGTCAATGCCGAATCAATAGTTTCAAGGACAAGAGTGTATCAGATGGAATTTTTTTCCTTGAGCTTCTTAGTTCTGTGCAACCTAGAGCTGTAAATTGGGGTCTTGTAACAAAAGGAATAACCGATCAGGAGAAAATGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAGATGATCCTTACACTAACAGCTAGCATAATGTATTGGTTCTTGAAACACCCTCTGGAAGAAAGAACAGTAGGGAGTTCAGACAGTGAGAGTGGGAGCCAATTGGAGACTACATCAAATTCAACACTGGATGATTCTGCTTCTGATTCATCAGCAGAAGAGAATGGAAGCATGTAA 1998 0.4004 MSGHWGILVSDPWLQNQFTQVELRSLKSQFVSMRRESGRLTVGDLASKMSRLKVVGENLSEKERASYIQDLYENTGEEVDFELFLKVYLKLQTFASSRTGSNAKNSSAFLKAATTTLLHTISESEKASYVAHINNYLAGDEFLKKCLPIDSSTNDLFEIAKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLVELVNDSEDMEELMSLAPEKILLRWMNFHLKKSDYKKIVTNFSSDVRDAEAYAHLLSVLAPEYTNPSTLAVKNPYERAKLVLEHADKMGCKRYITARDIVEGSPNLNLAFVAHIFQHRNGLSTQAKQSSLLENLLDDTQDSREERAFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVDWKIANKPPIKLPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDADILQWANSKASSSGSQCRINSFKDKSVSDGIFFLELLSSVQPRAVNWGLVTKGITDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPLEERTVGSSDSESGSQLETTSNSTLDDSASDSSAEENGSM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01806 665 Gene3D - 246 374 IPR036872 -
Phco3g01806 665 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Phco3g01806 665 FunFam Fimbrin-1 isoform A 507 619 - -
Phco3g01806 665 CDD CH_AtFIM_like_rpt1 124 239 - -
Phco3g01806 665 CDD CH_AtFIM_like_rpt3 391 504 - -
Phco3g01806 665 Gene3D - 389 506 IPR036872 -
Phco3g01806 665 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Phco3g01806 665 FunFam Fimbrin-2 like 119 245 - -
Phco3g01806 665 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Phco3g01806 665 FunFam Fimbrin-2 like 389 506 - -
Phco3g01806 665 MobiDBLite consensus disorder prediction 631 665 - -
Phco3g01806 665 PANTHER FIMBRIN/PLASTIN 4 623 IPR039959 GO:0051015|GO:0051017
Phco3g01806 665 Gene3D - 507 619 IPR036872 -
Phco3g01806 665 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Phco3g01806 665 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
Phco3g01806 665 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Phco3g01806 665 Gene3D - 119 245 IPR036872 -
Phco3g01806 665 Pfam Calponin homology (CH) domain 145 238 IPR001715 GO:0005515
Phco3g01806 665 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Phco3g01806 665 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Phco3g01806 665 Pfam Calponin homology (CH) domain 395 497 IPR001715 GO:0005515
Phco3g01806 665 MobiDBLite consensus disorder prediction 632 665 - -
Phco3g01806 665 SMART ch_5 516 620 IPR001715 GO:0005515
Phco3g01806 665 SMART ch_5 125 238 IPR001715 GO:0005515
Phco3g01806 665 SMART ch_5 395 497 IPR001715 GO:0005515
Phco3g01806 665 SMART ch_5 270 369 IPR001715 GO:0005515
Phco3g01806 665 FunFam Fimbrin-2 isoform A 246 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01806 Phco-Chr3 41447148 41453851 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01806 3 41447148 41453851 Phco1g01790 1 57388459 57397301 PCT