Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01790 ATGTCTGGCCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACACAAGTTGAACTTCGCAGCTTAAAATCGCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTGTGATTGCGGATTTGGCTTCCAAGATGTCAAGGTTGAAGGTGGTGGAAGAGAATCTGAGTGAGGAAGAGAGAGCTTCTTGTGTGAAGGATTTGTATCAAAACACTGAGGAGGAGGTTGATTTTGAATTGTTTCTTAAGGTCTACTTGAAACTCCAAACTTTTGCAAATTCTAGAACTGGAAGTAGTCCAAAGAACTCCTCAGCGTTCCTCAAGGCAGCTACAACGACATTGCTTCACACAATTAGTGAATCTGAGAAAGCATCATATGTAGCACATATAAATCACTATGTTGCAAAGGATGAGTTCCTTAAGAAATATCTTCCTATTGACCCTTCAACCAATGAGCTCTTTGAAATTGCAAAAGATGGTGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGGGCTATCAACACAAAAAGAATACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGCACAGTGGTCAATATTGGCACTCAGGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATCTCTCAGATTATTAAGATTCAATTATTGGCGGACCTTGATCTGAAGAAAACTCCTCAGCTTCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAATACACCAATCCCTCCACTTTGGCAGTTAAAAATCCCTTCGAGAGAGCAAAGTTAGTTCTAGAACATGCTGATAAGATGGGTTGCAAGAGATACTTAACTGCAAGAGACATTGTGGAAGGATCTCCAAATCTTAATCTTGCCTTTGTTGCTCATATTTTCCAGCACAGAAATGGACTTTCAGCTCAGACAAAACAACAGATGTCTCTCCTTGAAACATTTCCAGATGATACTCAAGACTCTAGAGAAGAAAGAGCATTTCGCCTATGGATGAATAGCCTTGGAAATTCAACATATGTCAACAATGTCTTTGAGGATCTTCGAAACGGGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTTAATTGGAAGATTGCCAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAACCAAGTTGTGAAAATAGGGAAACAGATTAAATTTTCACTGGTAAATGTTGCTGGAAACGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATTTGTGGCAATTGATGCGATACAACATCCTACAACTTCTCAAGAACTTGAGATTTCACTCTCGTGGGAAGGAGATAACCGATGCTGATATTTTAGAATGGGCCAACAGCAAGGTTAGCAGCTCTGGAAGCCAAAGCCGCATGGACAGTTTTAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGCAGCACAGAGCAGTAAATTGGGGTCTTGTAACAAAAGGAGTAACAGATCAAGAGAAAAAGATGAATGCAACCTACATTATCAGTATTGCAAGAAAGCTTGGCTGTTCTATATTCCTCCTTCCTGAAGACATAACCGAGGTGAATCAAAAAATGATTCTGACACTAACAGCTAGTATAATGTCTTGGTGCCTAAAGCATCCTCAAGAGGAAACAAGTGTGGGAAGTTCAGATAATGAGAGTGGGAGTCAATTGGAGACCACATCAAATTCAACACTTGATGACTCTGCATCTGATTCATCAGTAGATGAAAATGGGAACATGTAA 2001 0.4043 MSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLASKMSRLKVVEENLSEEERASCVKDLYQNTEEEVDFELFLKVYLKLQTFANSRTGSSPKNSSAFLKAATTTLLHTISESEKASYVAHINHYVAKDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKSGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQQMSLLETFPDDTQDSREERAFRLWMNSLGNSTYVNNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQIKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEITDADILEWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELLSSVQHRAVNWGLVTKGVTDQEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWCLKHPQEETSVGSSDNESGSQLETTSNSTLDDSASDSSVDENGNM 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01790 666 CDD CH_AtFIM_like_rpt3 392 505 - -
Phco1g01790 666 FunFam Fimbrin-2 isoform A 246 374 - -
Phco1g01790 666 Gene3D - 119 245 IPR036872 -
Phco1g01790 666 FunFam Fimbrin-2 like 390 507 - -
Phco1g01790 666 Coils Coil 42 65 - -
Phco1g01790 666 FunFam Fimbrin-2 like 119 245 - -
Phco1g01790 666 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
Phco1g01790 666 Pfam Calponin homology (CH) domain 518 622 IPR001715 GO:0005515
Phco1g01790 666 Pfam Calponin homology (CH) domain 396 499 IPR001715 GO:0005515
Phco1g01790 666 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Phco1g01790 666 CDD CH_AtFIM_like_rpt1 124 239 - -
Phco1g01790 666 SMART ch_5 125 238 IPR001715 GO:0005515
Phco1g01790 666 SMART ch_5 270 369 IPR001715 GO:0005515
Phco1g01790 666 SMART ch_5 517 621 IPR001715 GO:0005515
Phco1g01790 666 SMART ch_5 396 498 IPR001715 GO:0005515
Phco1g01790 666 MobiDBLite consensus disorder prediction 629 666 - -
Phco1g01790 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Phco1g01790 666 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Phco1g01790 666 PANTHER FIMBRIN/PLASTIN 4 625 IPR039959 GO:0051015|GO:0051017
Phco1g01790 666 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Phco1g01790 666 Gene3D - 390 507 IPR036872 -
Phco1g01790 666 FunFam Fimbrin-1 isoform A 508 620 - -
Phco1g01790 666 Gene3D - 246 374 IPR036872 -
Phco1g01790 666 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Phco1g01790 666 Gene3D - 508 620 IPR036872 -
Phco1g01790 666 ProSiteProfiles Calponin homology (CH) domain profile. 515 623 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01790 Phco-Chr1 57388459 57397301 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01806 3 41447148 41453851 Phco1g01790 1 57388459 57397301 PCT