Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01689 ATGGCAACTACATATTTCCCACTCAGGTGGGAGAGCACTGGGGATCAATGGTGGTATGCATCCCCAATAGATTGTGCTGCTGCAAATGGACACTATGACTTGGTTCGTGAGCTGCTAAAAATTGACAACAACCACCTCTTCAAGCTCACCTCATTGCGCAGAATTCGCCGCCTTGAAGTTGTGTGGGACGATGAAGAACAGTTCAATGATGTTGCAAAGTGCCGTTCACAGGTGGCACAGAAGTTGCTTCTTGAGTGTGAGTCAAAGAGAGGGAAGAACAAGAACTCTCTCATCCGTGCAGGGTATGGAGGGTGGCTAATGTATACTGCTGCATCAGCTGGGGACTTGAGTTTTGTGCAACAACTTCTTGAGAGGAACCCTTTGTTGGTGTTCGGAGAGGGGGAGTATAATGTCACTGATATCTTTTATGCTGCTTCCAGGGGCAAGAATTCTGAGGTTTTTAGGCAGGTTTTTGATTTTGCAGTTTCTCCGAGGTTTGTCACAGGAAAAGGTGGGGTTTTGGAGGAGCATGTTGGGGATATTCCTCCTGTTTACAAGTGGGAGATGAGCAATAGGGCTGTCCATGCTGCTGCTAGAGGGGGCAGTGTGGAGATTTTGGAGGAGTTTCTTGCTAATTGCTCTGATGTGTTGGCTTATAGAGATGCTCAGGGATCTACTATATTGCATTCTGCTGCAGGCAGAGGGCAGGTTGAGGTTGTTAAATATCTCACATCATCCTTTGACATAATAAACTCCACAGACCATCAGGGAAACGCTGCTCTGCATGTGGCTGCTTACAGGGGCCAATTAGCTGCAGTTGAGGCTCTAGTTTCCGCATCTCCTGCATTGGTTTCTCAGAGAAACAATGCGGGACACACTTTCCTCCATAAAGCTGTATCTGGTTTTCAGTCTACCTCATTCAGAAGGTTGGACAGACAGGTTGAACTTTTGAGGCAGTTAGTAAGTTGCAAAAAATTTCACATAGAGGAAGTCATCAATGTAAAGAACACTGATGGAAGAACTGCACTCCATATTGCCACAATGGGTAAAATCCACACTGATCTTGTTAAGCTCCTGATGACTGCTCCATCAATCAATGTGAATGTGAGTGATGTTGATGGCATGACCCCACTTGATTACCTCAAGCAAAGTCCGAACACAGCAGCATCAAATGTACTGATCAGGAAGCTGGTTGCAGCTGGGGGAATGTTCCACAATCAGGGCTATAATTCAAGAAAAGCCATAGCTTCACACATGAAAATGCATAGTATTGGAGGCAGTCCTGGAACATCATTTAGAATCTCAGACACTCAGATGTTTTTGTACACAGGAATTGAGAATGCATCAGATGCTAGTACGGATCAGGGAAGTGCAGGAATGAGTTCATCTTCATCAGACCATACTGCATATGAATCAGCAGCAGAGAACAGACCCTCAACAACAAGCATCAGGCCATCGGTGGCTGCCGGGTTGAAACGAGTCCTTCAGTGGCCACTGGTGAAGGACAAGAAAGGTGAGGGGATCAGAAAATCAATGGATGAGGGTTCAGTGGACTCATGCAGGAAATGGGACATCACAGATGAAATTCCAACTCCACTAAGACAAAAGTTCTTTAGGCATTCAGCACTTCAAAACAACAAAAGGAACCTATCTGTAAGGAGTTACCAGTCAAGTCCAAATGCTAAGAAGAGATTTGCTTCAGAACTGGTACATGTGAAGGTTTCAAGAAGATCAAGATCTAGCTCATTTTCTATATCATCATTGTCATCACCTAGATCGATAGATAAACAAAAGGGTTTTTGTGTTGACAATGATGTTGCTGGACCATCTCGCACAAGTCACCAAAATGACAAATCAACAAATTCAGGGAAAAAAGCTTCTGTTAGCAAAAAGCTAAGGGGCCATTATTTCTGTTTTTCAAAAGCTTCAGTAGACAGGGAGAAAGATAGCCATAGCTACAAGGACCATGATGTTTTTGTGAGTGGCCTAATTGGATGA 1998 0.4429 MATTYFPLRWESTGDQWWYASPIDCAAANGHYDLVRELLKIDNNHLFKLTSLRRIRRLEVVWDDEEQFNDVAKCRSQVAQKLLLECESKRGKNKNSLIRAGYGGWLMYTAASAGDLSFVQQLLERNPLLVFGEGEYNVTDIFYAASRGKNSEVFRQVFDFAVSPRFVTGKGGVLEEHVGDIPPVYKWEMSNRAVHAAARGGSVEILEEFLANCSDVLAYRDAQGSTILHSAAGRGQVEVVKYLTSSFDIINSTDHQGNAALHVAAYRGQLAAVEALVSASPALVSQRNNAGHTFLHKAVSGFQSTSFRRLDRQVELLRQLVSCKKFHIEEVINVKNTDGRTALHIATMGKIHTDLVKLLMTAPSINVNVSDVDGMTPLDYLKQSPNTAASNVLIRKLVAAGGMFHNQGYNSRKAIASHMKMHSIGGSPGTSFRISDTQMFLYTGIENASDASTDQGSAGMSSSSSDHTAYESAAENRPSTTSIRPSVAAGLKRVLQWPLVKDKKGEGIRKSMDEGSVDSCRKWDITDEIPTPLRQKFFRHSALQNNKRNLSVRSYQSSPNAKKRFASELVHVKVSRRSRSSSFSISSLSSPRSIDKQKGFCVDNDVAGPSRTSHQNDKSTNSGKKASVSKKLRGHYFCFSKASVDREKDSHSYKDHDVFVSGLIG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01689 665 Gene3D - 11 417 IPR036770 -
Phco3g01689 665 ProSiteProfiles Ankyrin repeat profile. 223 255 IPR002110 GO:0005515
Phco3g01689 665 MobiDBLite consensus disorder prediction 451 483 - -
Phco3g01689 665 MobiDBLite consensus disorder prediction 583 628 - -
Phco3g01689 665 Pfam Ankyrin repeats (many copies) 225 277 IPR002110 GO:0005515
Phco3g01689 665 Pfam Ankyrin repeat 338 369 IPR002110 GO:0005515
Phco3g01689 665 MobiDBLite consensus disorder prediction 608 627 - -
Phco3g01689 665 ProSiteProfiles Ankyrin repeat region circular profile. 223 243 - -
Phco3g01689 665 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 2 467 - -
Phco3g01689 665 SUPERFAMILY Ankyrin repeat 22 394 IPR036770 -
Phco3g01689 665 SMART ANK_2a 256 285 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 223 252 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 189 218 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 290 330 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 18 47 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 338 369 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 102 131 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 136 166 IPR002110 GO:0005515
Phco3g01689 665 SMART ANK_2a 373 406 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01689 Phco-Chr3 28661755 28664458 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01689 3 28661755 28664458 Phco3g01689 3 28661755 28664458 ECH
Phco11g01881 11 15123902 15124930 Phco3g01689 3 28661755 28664458 PCT