Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01530 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCAACAAAAAGATGGTTACATGAGCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAATTTGGGGTGCATTCCACAAAGAATCAATGTCTTCATCATCATCTCCCTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTACTCCACCTTCTTGTTAGATTTCTCATAAAGAACCCTTCTTCCTCAGCATCTTCCGAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGTTGCAACAACTTTTCCATCTACATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTTCATATAAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGTAGGGGAACCCTCCTTACTCCTGGCTTTTCCCATGAAAATCAAGTAATTGATTTTGATGATTTGAGGGATGATGGGGGTTGGTCCTGCAATGGGGAAAATGAGTTCACAACTAGGCAGAAAACGGTTGAAATTGAAGAAAGTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGAATTGGCAAGTTCAGAAGGCTTGATGTGGAGGCAGAGGAGGCTGCAGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTACTCCATGGGATCTTATCAATACGTGCTTGGCAAGTCAGACCTCAGGGTAACCTTGAGCCATGATCGACAAGGTGTTGTACAATTCGTGAAAGGAACAGAAAACTTAGAGAGATTTTCAGTTGAGGGGGATATTGAAGGAAAGAAGATTACAAGTGTCTGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGCAGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCTTCTGATACCCAGATGGGCATGCCCTCTTCTCTTAACACCGATTTGCCTTGGATGAGAGAAACAGGAAGGACATGA 1161 0.4384 MNGKWSFDHTHLKMAWIQHQIQQKDGYMSYPPPVLPPPSPPIWGAFHKESMSSSSSPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASSESNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFSHENQVIDFDDLRDDGGWSCNGENEFTTRQKTVEIEESVVEKGVFPVRIGKFRRLDVEAEEAAGGETSSNNLDARRCYSMGSYQYVLGKSDLRVTLSHDRQGVVQFVKGTENLERFSVEGDIEGKKITSVCKGESYSVSKIWQWSKKGKFSVSSSDTQMGMPSSLNTDLPWMRETGRT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01530 386 SMART ring_2 158 199 IPR001841 -
Phco3g01530 386 MobiDBLite consensus disorder prediction 361 386 - -
Phco3g01530 386 SUPERFAMILY RING/U-box 137 206 - -
Phco3g01530 386 Pfam Ring finger domain 157 200 IPR001841 -
Phco3g01530 386 CDD RING-H2_EL5-like 157 200 - -
Phco3g01530 386 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Phco3g01530 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 61 350 - -
Phco3g01530 386 FunFam RING-H2 finger protein ATL46 120 205 - -
Phco3g01530 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 205 IPR013083 -
Phco3g01530 386 MobiDBLite consensus disorder prediction 361 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01530 Phco-Chr3 18952856 18954016 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01530 3 18952856 18954016 Phco3g01530 3 18952856 18954016 ECH
Phco8g01243 8 13019950 13020963 Phco3g01530 3 18952856 18954016 ECH