Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01482 ATGGTACTTCTCCGGAATTTCAACCCAAACCTCGAACAGACGACACTAACACATAGCAGGAACAAGGAGATCTTCTCCGCCCAAGCAGGAATAATGCCTATACTTGATGATAGAGAGTGTTATGAGAAGAAGAAAAAAGCAAGAAGATTAGTTTTAATTTGGAAGATGAAACTCTTATTTGTTGTCTTAGGAATGTGTGTTGTTGCTTTACCTTGTGTGTGGGGCAGAATGGAACTTGATGCAGGTCCAAGATTCAATGTCATTGACTATGGTGCCATGGGCAATGGTGAAACTGATGATTCCCAAGCTTTTCTGAAAGCATGGAAAGACGCATGTAATGCAAGTTATGGCACTCCAACACTTCTCATACCCAAAGAGAAAACTTTCATGTTGCAGCCTCTCTTGTTCAGTGGTCCCTGCAATCCTGCAATCGTTCACATTAAGCTAAAGGGAAGCATTACTGCCCCAAAGAAGATTAAGGCTTGGAAATTGGGAAAAGGTACTCGGAAGGCATGGATCCGTTTCAGGCGTATAAATGGTCTTGTTATTCGTGGAGGGGGACAAATTGATGGCCAAGGTGCTCCATGGTGGAATTCCTACTTCAATACTGAAATTAACAGACCAACTGCTCTACATTTTGGTGAATGCAACAATCTATTTCTCAGCGGATTGACTCACATCAACAGCCCCAAAAATCATATAAGCCTAAACAGATGCAATGGATCCTTCATCTCCAAACTTCATTTTATTGCACCAGATGAAAGTCCCAACACTGATGGAATTGATATCTCCTATTCATCCAACATTCTCATCAAGAATTCTAAGATGGAAACTGGAGATGATTGCATTGCCATTAACCATGGATCCAGCTTCATCAGCATAATTGGTGTTTATTGTGGACCTGGGCATGGCATCAGTATTGGGAGCTTAGGAAAAAATGGAGCTCATCAAACAGTAGAAGAGATATATGTACGAAATTGCACCTTCAATAGAACCACAAATGGAGCTAGAATCAAGACATGGATAGGAGGTCAAGGATATGCAAGGAAGATCACATTTAAGGATATAGTAGTTGTGGAAGCTACAAACGCTGTAATTATTGATCAACAATACAACCCATATGATAGTGTTGAAGCAGTGAGGGTGAGTGATGTTAGTTATCACAATGTGAGGGGAACCTCAAGTTCCGCGCATGCAATCAAACTGCATTGTGACAAAAACATAGGTTGCACCAACATTGTATTGAAGGGGATTAACATAACTACCATTGCTGGAAAGAAAACTTATGCATCATGCAAAAATGTAAAAGGGGTGTGCTCTTTCTGTAATCCCCATGTGCCATGTCTTTCTCACTCCTGA 1359 0.4091 MVLLRNFNPNLEQTTLTHSRNKEIFSAQAGIMPILDDRECYEKKKKARRLVLIWKMKLLFVVLGMCVVALPCVWGRMELDAGPRFNVIDYGAMGNGETDDSQAFLKAWKDACNASYGTPTLLIPKEKTFMLQPLLFSGPCNPAIVHIKLKGSITAPKKIKAWKLGKGTRKAWIRFRRINGLVIRGGGQIDGQGAPWWNSYFNTEINRPTALHFGECNNLFLSGLTHINSPKNHISLNRCNGSFISKLHFIAPDESPNTDGIDISYSSNILIKNSKMETGDDCIAINHGSSFISIIGVYCGPGHGISIGSLGKNGAHQTVEEIYVRNCTFNRTTNGARIKTWIGGQGYARKITFKDIVVVEATNAVIIDQQYNPYDSVEAVRVSDVSYHNVRGTSSSAHAIKLHCDKNIGCTNIVLKGINITTIAGKKTYASCKNVKGVCSFCNPHVPCLSHS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01482 452 ProSitePatterns Polygalacturonase active site. 296 309 IPR000743 GO:0004650|GO:0005975
Phco3g01482 452 PANTHER - 85 437 - -
Phco3g01482 452 SMART pbh1 348 369 IPR006626 -
Phco3g01482 452 SMART pbh1 410 437 IPR006626 -
Phco3g01482 452 SMART pbh1 266 287 IPR006626 -
Phco3g01482 452 SMART pbh1 377 404 IPR006626 -
Phco3g01482 452 SMART pbh1 319 340 IPR006626 -
Phco3g01482 452 SMART pbh1 239 265 IPR006626 -
Phco3g01482 452 Pfam Glycosyl hydrolases family 28 119 439 IPR000743 GO:0004650|GO:0005975
Phco3g01482 452 Gene3D - 77 447 IPR012334 -
Phco3g01482 452 SUPERFAMILY Pectin lyase-like 81 449 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01482 Phco-Chr3 16310904 16318936 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01482 3 16310904 16318936 Phco3g01482 3 16310904 16318936 ECH
Phco1g01863 1 58223966 58225706 Phco3g01482 3 16310904 16318936 PCT