Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01863 ATGGCACAAATAGTTTTGCATGCTTTGGTACTATTTTTGTTCACATTTACACCAGCCAGAGTGGCTGAGGGGGTAACTCTGAATGTTGTCAATTTTGGGGCCCAGCCAGATGGTGAAACTGACTCCACAAACGCATTCTTGAGTGCATGGGGTAGAGCATGCAGCTCAACAACACCAACCACCATTTATGTGCCACTGGGAAGGTTCTCAGTTGGTAAAGTAGTGTTTAAGGGGCCATGCAAGAACAAGGGCATCACAGTACGCATTGATGGTGCCCTGGTTGCATCTTCAAACCATGATGTCATTGGAAATGGTGGAAATTGGTTGTATTTTGATGATGTTGATGGAGTTGCAGTGATTGGTGGTGTTCTTGATGGGCAAGGAATAGGTCTGTGGGAATGTAAGAGATCTGGCAAGATTTGTCCAACTGGTGCTACGAACTTGGGATTTAGCAATTCGAACAACATTGTGATGAATGGAGTGAGGTCTCTGAACAGCCAAATGTTCCACATAGTTATTGATCGATGTGAGAATGTGAGAGTAGAGGGTGTTAAGGTATCAGCTGCAGGAAACAGCCCTAACACTGATGGCATTCACGTTCAACTCTCATCCACAGTCACCATTCTCAACTCCAGCATAGCAACAGGTGATGATTGCATCTCAATTGGTCCTGGAACTACTAATTTATGGATACAAAACATAGCTTGCGGACCTGGTCATGGGATAAGCGTGGGGAGTTTAGGGAAGGAATTAGAAGAGGCTGGTGTGGAGAATGTGACAGTGAAAGCAGTGACATTTGCTGGAACTGAGAATGGTGTGAATAAAGTATCTGGGGTTGAAATTAGCAACATTAAGTACCAAGATATTCATGGAAGCTCGGCATCAGAAGTTGCAGTGAAAATGAATTGTAGTCCGAAGCACCAGTGCAGTGGAATAAGTTTGGAAGATTTGATGCTTACATATGAAACCAAACAAGCCCTGGCTTCATGCAATCACGTTGGAGGAATCGCGTCTGGTCTAGTTCAACCCAACAACTGCTTCTAA 1044 0.4425 MAQIVLHALVLFLFTFTPARVAEGVTLNVVNFGAQPDGETDSTNAFLSAWGRACSSTTPTTIYVPLGRFSVGKVVFKGPCKNKGITVRIDGALVASSNHDVIGNGGNWLYFDDVDGVAVIGGVLDGQGIGLWECKRSGKICPTGATNLGFSNSNNIVMNGVRSLNSQMFHIVIDRCENVRVEGVKVSAAGNSPNTDGIHVQLSSTVTILNSSIATGDDCISIGPGTTNLWIQNIACGPGHGISVGSLGKELEEAGVENVTVKAVTFAGTENGVNKVSGVEISNIKYQDIHGSSASEVAVKMNCSPKHQCSGISLEDLMLTYETKQALASCNHVGGIASGLVQPNNCF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01863 347 PANTHER - 275 333 - -
Phco1g01863 347 SMART pbh1 226 246 IPR006626 -
Phco1g01863 347 SMART pbh1 176 202 IPR006626 -
Phco1g01863 347 SMART pbh1 256 283 IPR006626 -
Phco1g01863 347 SMART pbh1 203 224 IPR006626 -
Phco1g01863 347 SUPERFAMILY Pectin lyase-like 13 347 IPR011050 -
Phco1g01863 347 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Phco1g01863 347 Gene3D - 15 346 IPR012334 -
Phco1g01863 347 Pfam Glycosyl hydrolases family 28 276 333 IPR000743 GO:0004650|GO:0005975
Phco1g01863 347 Pfam Glycosyl hydrolases family 28 54 273 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01863 Phco-Chr1 58223966 58225706 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01863 1 58223966 58225706 Phco1g01863 1 58223966 58225706 ECH
Phco1g01863 1 58223966 58225706 Phco3g01482 3 16310904 16318936 PCT