Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01317 ATGGCTCTTCCTCCCTCTTCAGTTGCATTCTTTTTCACCTCTTTCTTTCTCCTCACCCTTCTCCTTGCCGATTCAACTCAGCCTCCTCACTCCTGCGACTCCTCCTCCAACTCACCGTACTACGCATTCTGCAACACCAAGCTCCCTATCCCCCAGAGAGCAAAAGACCTGGTCTCGCGACTCACCCTCGACGAGAAACTCGCCCAACTCGTTAACTCAGCGCCCGCGATTCCCCGACTCGGCATCCCCAAATATCAGTGGTGGAGCGAAGCCTTGCACGGTGTCGCCGACGTAGGCCTCGGCATCAGATTCAATGGCACTATCAAGTCCGCCACCAGCTTCCCTCAAGTCATTCTCACTGCCGCCTCCTTCGACCAAAACCTCTGGTACAATATCAGCAAGGCGATTGGCCGGGAAGCGAGGGCGGTGTACAATGCGGGGCAAGCCTTAGGGATGACGTTTTGGGCTCCGAACATTAACGTTTTCAGGGATCCACGGTGGGGCAGGGGGCAAGAGACGGTGGGAGAAGACCCATTGATGAATGCAAAGTACAGTGTGGCTTACGTGAGAGGGCTTCAAGGTGATTCCTTTGAAGGAGGGGAACTTGGGGAGAGGCTTCAAGCTTCTGCGTGTTGCAAGCACTTCACAGCCTATGATGTGGACCAATGGAAGGGCCTCGATCGCTTCGTCTTCGATGCTCGTGTCTCAATGCAAGATTTGGCAGACACGTACCAACCTCCATTCAAGAGTTGCATTCAGCAAGGTCGAGCCAGTGGCATAATGTGTGCCTACAACCGTGTCAATGGGGTTCCAAATTGTGCAGATTTTAATCTCTTAACCAAAACCGCAAGACAACAATGGAAATTTGAAGGATATATTACGTCAGATTGTGGAGCAGTCTCTATCATACACGACAAACAAGGTTATGCCAAAACAGCAGAAGATGCTATAGCCGATGTCTTTAGGGCAGGGATGGATGTAGAGTGTGGTGATTACATAACTCAGCATGCAAAATCAGCTGTGTCACAGAAAAAGTTGTCCATATCTCAGATCAACCGTGCTCTTCAGAACCTATTCTCCATAAGAATGAGGCTAGGCCTATTTGATGGGAACCCCACGAAGCTTCCCTATGGCACCATTGGTCCCAACGAAGTGTGTTCCAAAGAACACCTCCAACTTGCTCTTGAAGCAGCAAGAGATGGCATAGTCCTTCTAAAGAACACTGATTCACTTCTCCCACTTCCAAAAACAAGCCTCAGTGTTGCTGTGATTGGCCCAAATGCCAATGCCTCGTCTCTAGTTTCCCTAGGAAACTATTATGGTCGTCCTTGCAAATTGGTGACCCTTTTGCAAGGCTTTGAAGGCTATGCTAAGGACACCACTTACCACCCTGGGTGTGATGATGGCCCACAATGTGCCTCTGCACGGATAGAAGAGGCAGTAGAGGTTGCAAAAAAGGTGGATTATGTGGTGCTTGTTATGGGGTTGGATCAAAGTCAAGAGAGGGAGTCACATGACAGAGAATACCTAGGTTTGCCAGGGAAGCAAGAAGAGTTGGTCAAGAGTGTGGCCAAGGCTTCTAAGAGGCCAGTTGTTTTGGTGCTGTTGTGTGGAGGGCCAGTGGATATCACTTCAGCCAAGTTTAATAACAAAGTTGGAGGAATCTTGTGGGCTGGGTACCCAGGAGAAGTTGGAGGAGTGGCCCTGGCACAGGTTATCTTTGGTGACCATAACCCAGGCGGTAAACTACCAATTACTTGGTACCCCAAGGATTTCATCAGAATACCAATGACTGATATGAGGATGAGAGCTGATCCAGCCTCAGGCTACCCAGGGAGAACCTACAGATTTTACACTGGTCCAAAGGTCTATGAATTTGGCTATGGCCTAAGCTACACAAAATATTCCTACAATCTCCTCTCTCTCTCACACAACACCCTCCACATCAACCAATCCTTCACCCATTTGATGACTGAAAATTCAGAAACCATCCGTTACAAACTGGTTTCAGACTTGGGAGAAAAAACATGCCAATCCATGTCATTGTCAATCACTTTGGGAGTCACAAATCATGGTAACATGGCTGGGAAGCATCCAGTGTTGTTGTTTTTGAAGAAGGGACAAGTGAGAAAGGGGAATCCGGTGAAACAATTGGTGGGATTTCAAAGTGTGAACTTAAATGCAGGGGAAACTGCTCAAGTGGGCTTTGAGCTAAGCCCGTGTGAGCATCTTAGCATGGCAAACGAATCTGGTTCATTGATGATTGAAGAAGGGTCTTATTTGTTGCTTGTGGGGGACCAAGAGTACCCATTAAAAGTTACAGTTTGA 2328 0.4832 MALPPSSVAFFFTSFFLLTLLLADSTQPPHSCDSSSNSPYYAFCNTKLPIPQRAKDLVSRLTLDEKLAQLVNSAPAIPRLGIPKYQWWSEALHGVADVGLGIRFNGTIKSATSFPQVILTAASFDQNLWYNISKAIGREARAVYNAGQALGMTFWAPNINVFRDPRWGRGQETVGEDPLMNAKYSVAYVRGLQGDSFEGGELGERLQASACCKHFTAYDVDQWKGLDRFVFDARVSMQDLADTYQPPFKSCIQQGRASGIMCAYNRVNGVPNCADFNLLTKTARQQWKFEGYITSDCGAVSIIHDKQGYAKTAEDAIADVFRAGMDVECGDYITQHAKSAVSQKKLSISQINRALQNLFSIRMRLGLFDGNPTKLPYGTIGPNEVCSKEHLQLALEAARDGIVLLKNTDSLLPLPKTSLSVAVIGPNANASSLVSLGNYYGRPCKLVTLLQGFEGYAKDTTYHPGCDDGPQCASARIEEAVEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELVKSVAKASKRPVVLVLLCGGPVDITSAKFNNKVGGILWAGYPGEVGGVALAQVIFGDHNPGGKLPITWYPKDFIRIPMTDMRMRADPASGYPGRTYRFYTGPKVYEFGYGLSYTKYSYNLLSLSHNTLHINQSFTHLMTENSETIRYKLVSDLGEKTCQSMSLSITLGVTNHGNMAGKHPVLLFLKKGQVRKGNPVKQLVGFQSVNLNAGETAQVGFELSPCEHLSMANESGSLMIEEGSYLLLVGDQEYPLKVTV 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01317 775 Pfam Fibronectin type III-like domain 700 767 IPR026891 -
Phco3g01317 775 FunFam probable beta-D-xylosidase 2 387 633 - -
Phco3g01317 775 SUPERFAMILY (Trans)glycosidases 41 401 IPR017853 -
Phco3g01317 775 PANTHER SUGAR HYDROLASE-RELATED 19 771 IPR044993 GO:0009044|GO:0045493
Phco3g01317 775 Gene3D - 53 375 IPR036962 GO:0004553|GO:0005975
Phco3g01317 775 FunFam probable beta-D-xylosidase 7 53 374 - -
Phco3g01317 775 Gene3D Immunoglobulins 633 775 IPR013783 -
Phco3g01317 775 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Phco3g01317 775 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Phco3g01317 775 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Phco3g01317 775 SMART Fn3_like_2 698 768 IPR026891 -
Phco3g01317 775 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 635 IPR036881 GO:0004553|GO:0005975
Phco3g01317 775 Pfam Glycosyl hydrolase family 3 N terminal domain 107 359 IPR001764 GO:0004553|GO:0005975
Phco3g01317 775 Gene3D - 387 632 IPR036881 GO:0004553|GO:0005975
Phco3g01317 775 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 632 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01317 Phco-Chr3 12613327 12617844 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01317 3 12613327 12617844 Phco3g01317 3 12613327 12617844 ECH
Phco3g01317 3 12613327 12617844 Phco7g01153 7 9923587 9928066 PCT