Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01287 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCAAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGAACATTCCAAGGAGGAGCACCAGGAACAGCTTCATACAGTGGTGTGCCGGCGGCAGGACCGTCGGCACTAGCACCACCGCCGCCGCCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCCACCACAATACTACCAACAACTCTATGGACCATCCTCTTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGTACCTTTTCTACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAACGGAAGGCTCATTTTCTGCATATCGTCCACCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCGCAGACTCAGCAACGTACATCGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCCGAAAGTTCAAATACCCAAGGGAGGAACTGA 828 0.4952 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGPSALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQPPQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPTEGSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTSSEAAGGVVITSESSNTQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01287 275 Gene3D - 3 111 IPR012677 -
Phco3g01287 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Phco3g01287 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Phco3g01287 275 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
Phco3g01287 275 MobiDBLite consensus disorder prediction 220 275 - -
Phco3g01287 275 PANTHER BOULE-RELATED 6 254 - -
Phco3g01287 275 MobiDBLite consensus disorder prediction 245 275 - -
Phco3g01287 275 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Phco3g01287 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Phco3g01287 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Phco3g01287 275 MobiDBLite consensus disorder prediction 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01287 Phco-Chr3 12047358 12051758 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01287 3 12047358 12051758 Phco3g01287 3 12047358 12051758 ECH
Phco3g01287 3 12047358 12051758 Phco7g01109 7 9395973 9400060 PCT