Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01204 ATGAGTCATAGGAAACTGCCAGAGAAAGCCATAAGCCTTTTCGCCTCGCGCGTTCGACTCAAGGCTGAGGGACTCTGTACCGTCCCGAGCCCAATAGCGCTGGCAGCGTATGACGCTAAGAAGAATGTCTCACTCGGACTAGAGAGAAGTAAGGGGAGGGGGTGGCACCAACGACTGGAAACTGGAATTCTGAAAATGGATAAAACGAAAGAGAACTGGGCGTCGAACGACATCGTTTTGCAGGTGGGAATGGTCGTGCTCATGCTCCTCTTCTACCTCTTCATGCACAACGTCCCCAAAAAGCTGTGGTCAGAGTTCCGTCTCCGCAATCGCGCCGACATCCAAGCCAAGCGCCACTTCGTCCAGGGGGCCCAGCTCCTGGCCCGAGCCCGTGCCTCCAAGTCCAAGGCCCTCGCCAAAGAAGCCCAGGCCCAGGCCCAACGCGCCATCGCCCTCGACCCCCGCGACGCCGCCCCCCACCTCCTCAAAGCCCTCGCCCTCGACTTCCTTGGATTCCGCTCCGCCGCCCTCGATTCCCTCGACGACGCCCTCTCCCCCCTCGCCGCCACCTCCCTCTCCAACTCCGAGCGCGCCGACGCCCTCCTCAAACGCGCCGAGCTCAGACTCGCCTCGACTCAGCGCGCCCGAGTCGACTCGGCCCTAGCGGATCTTTCCGAGTCCGTCAAACTCAGCCCCAACAACTCCAAGGCCTTCTTCGCCCTGGGAGAGTGCTTCGAGCGGAAGAAGATGAACGCCGCCGCCGTTGAGGCCTACCAGCAGGCTCTCGAATTGGAACCCCAATCGCAGGTCGCTCAACAAGCCCTACACAGGTTGGATTCTTCGCCCCAAACCAATTGA 858 0.6096 MSHRKLPEKAISLFASRVRLKAEGLCTVPSPIALAAYDAKKNVSLGLERSKGRGWHQRLETGILKMDKTKENWASNDIVLQVGMVVLMLLFYLFMHNVPKKLWSEFRLRNRADIQAKRHFVQGAQLLARARASKSKALAKEAQAQAQRAIALDPRDAAPHLLKALALDFLGFRSAALDSLDDALSPLAATSLSNSERADALLKRAELRLASTQRARVDSALADLSESVKLSPNNSKAFFALGECFERKKMNAAAVEAYQQALELEPQSQVAQQALHRLDSSPQTN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01204 285 ProSiteProfiles TPR repeat profile. 235 268 IPR019734 GO:0005515
Phco3g01204 285 SUPERFAMILY TPR-like 135 268 IPR011990 GO:0005515
Phco3g01204 285 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 126 274 - -
Phco3g01204 285 Coils Coil 195 215 - -
Phco3g01204 285 Gene3D Tetratricopeptide repeat domain 109 278 IPR011990 GO:0005515
Phco3g01204 285 SMART tpr_5 123 156 IPR019734 GO:0005515
Phco3g01204 285 SMART tpr_5 235 268 IPR019734 GO:0005515
Phco3g01204 285 SMART tpr_5 198 234 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01204 Phco-Chr3 10643538 10645869 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01204 3 10643538 10645869 Phco3g01204 3 10643538 10645869 ECH
Phco3g01204 3 10643538 10645869 Phco7g01069 7 8834986 8835651 PCT