Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01140 ATGCCAATATTGGCATCATGGAAGTTCCAAAGTTTCTTTGTTATTTTGTTTACTTTCTTTTCTTATTCTTTTTCTTCTATTTTCACCATAACCAATAACTGCCCCCATACTATATGGCCTGGCACACTCTCTGGTTCTGGCTCACCACCGCTTCCGACAACCGGATTCCAGCTGGACTCAGGCCAGATAATCAAACTCAATAGTGTTCCAGGGTGGTCAGGAAGGATTTGGGCTAGGACTGGCTGCACATTTGATGCAACAGGAATTGGCAAGTGTCAAACAGGTGATTGTGGTGGAAGATTGGAATGTGATGGAAATGGTGCTGCTCCTCCTACCTCATTGTTCGAGATCACACTTGGACAAGGCAATGAGCAAGACTTCTATGATGTCAGCATGGTGGATGGCTACAATTTGCCATTGCTTGTTCAACCAAGAGGTGTCTATGGTACTGGGGTCTGTAATGCAACAGGTTGTGTCACAGACATCAACAGAGGTTGTCCAAAAGAACTTCAAGTAGTGGGTGGAGATGGATACCAGGATGGTGTAGTTGGGTGTAAAAGTGCTTGTGAGGCATTTGGATCGGATCAGTACTGCTGCAGTGGAGAATTTGCCAATCCAACTACATGCCAGCCATCCTATTATTCCACCCTTTTCAAGCAGGCTTGTCCAAAAGCTTATAGCTATGCATTTGATGATGCTACCAGCACTTTCATTTGCAAAGCTTTTGAATATGACATTGTTTTTTGTCCCAACAGCAACAGGGCTAAAACACCGAATGCTCCATTTCCTCCTCTACCACCATCAATTGGATGGCCTGATCAGAAGGTTCAACAGCAGGTCCATTCTTCTTCAGATATTCTCTTGCCCTTTCCAGTGACACTCTTTCTCTTCGTTTCCACTATCTCTTTGCTTGCAGCAAAGTCTCAGACACTGATATGA 939 0.443 MPILASWKFQSFFVILFTFFSYSFSSIFTITNNCPHTIWPGTLSGSGSPPLPTTGFQLDSGQIIKLNSVPGWSGRIWARTGCTFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGQGNEQDFYDVSMVDGYNLPLLVQPRGVYGTGVCNATGCVTDINRGCPKELQVVGGDGYQDGVVGCKSACEAFGSDQYCCSGEFANPTTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFEYDIVFCPNSNRAKTPNAPFPPLPPSIGWPDQKVQQQVHSSSDILLPFPVTLFLFVSTISLLAAKSQTLI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01140 312 Gene3D Thaumatin 27 250 IPR037176 -
Phco3g01140 312 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Phco3g01140 312 SMART tha2 28 250 IPR001938 -
Phco3g01140 312 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Phco3g01140 312 PIRSF PR5 1 283 IPR001938 -
Phco3g01140 312 PANTHER OS03G0233200 PROTEIN 13 250 IPR001938 -
Phco3g01140 312 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Phco3g01140 312 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Phco3g01140 312 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Phco3g01140 312 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Phco3g01140 312 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Phco3g01140 312 FunFam THAUMATIN-LIKE PROTEIN 1 26 250 - -
Phco3g01140 312 SUPERFAMILY Osmotin, thaumatin-like protein 27 251 IPR037176 -
Phco3g01140 312 CDD TLP-PA 30 249 - -
Phco3g01140 312 Pfam Thaumatin family 32 250 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01140 Phco-Chr3 9827690 9828893 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01140 3 9827690 9828893 Phco7g01545 7 14658119 14659241 PCT