Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01027 ATGCGCCTCGGCTGCTTCACGCTGCTGTGTCTCTGTTGTTGTTGGTTTGTCTCGGGAGAGGGCGAAACTGTGTCGTGTTCCAACGTAGTGCCGTTGGGGTTCCGCACCGAAAACATCTCCATAACTGAATTCGGCGGCGTCGGTGATGGCCGCACCCTCAACACCAAGGCCTTCAGAGAGGCCATATATAGGGTTCAGCACTTGCCACGTGTAGGAGGCACTCTCCTTTACGTTCCTCCCGGGGTCTACTTAACGGAACCCTTCAACCTCACCAGCCACATGACGCTCTTCCTCGCTGCCGGCGCCGTTATCATGGCCACGCAGGATTCATCAAATTGGCCTCTGATTGCACCCTTGCCTTCTTATGGAAGAGGAAGGGAGCTGCCTGGAGGAAGGTATATGAGTTTTATGCATGGAGATGGAGTTCAAGATGTGGTAATCACTGGTGAAAATGGCACAATTGATGGGCAAGGAGATGCTTGGTGGAATAAGTGGAGGCAGGGATCTCTACAGTTTACCAGACCAAACCTTGTCGAATTTGTGAATTCTAGAGATATTATTATTTCAAATGTAATCTTCAAGAATTCTCCTTTCTGGAACATACACCCGGTTTACAGCAGCAATGTTGTTGTTAGATTTGTCACCATTTTGGCTCCACGTGACTCTCCAAATACTGATGGCATTGATCCAGATTCAAGTTCAAATGTGTGCATAGAGGACTCATACATATCTACTGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGATGAATATGGGATTGCTTATGGCCTTCCTAGCTCTAACATTACCATCAGGCGAGTAAGTGGATCATCTCCATTTGCTGGAATTGCTATTGGCAGTGAAACCTCTGGTGGGGTGGAGAATGTACTTGCTGAACACATCAACCTTTACAAAATGGGAATTGGTATCCACATTAAGACCAACAGTGGCAGGGGTGGATTTATAAAGAATATAACCGTGTCTCATGTGTATATGGAAGATGCAAGGAAGGGAATAAGGATCTCCGGTGATGTTGGGGACCACCCTGATGACAAATTTGATCCGAATGCTCTCCCCATTGTGAAGGGTGTCACGATGAAGAATGTTTGGGGTGTAAAGGTTTTGCAGGCTGGCTTGATACAAGGGGTGAAAAATTCACCTTTCACTGATATTTGCCTTTATGATATCAACCTTGGTGGAGTGACAGGACCTAGAACTCCTCCTTGGAAGTGTTCTGATGTGTCTGGATTTGCTCATCAGGTTAGCCCTTGGCCATGTTCTGAGCTTAGCAGCAACCATCAGGGATCATGTGCCAATTACTCCTGA 1329 0.4703 MRLGCFTLLCLCCCWFVSGEGETVSCSNVVPLGFRTENISITEFGGVGDGRTLNTKAFREAIYRVQHLPRVGGTLLYVPPGVYLTEPFNLTSHMTLFLAAGAVIMATQDSSNWPLIAPLPSYGRGRELPGGRYMSFMHGDGVQDVVITGENGTIDGQGDAWWNKWRQGSLQFTRPNLVEFVNSRDIIISNVIFKNSPFWNIHPVYSSNVVVRFVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGLPSSNITIRRVSGSSPFAGIAIGSETSGGVENVLAEHINLYKMGIGIHIKTNSGRGGFIKNITVSHVYMEDARKGIRISGDVGDHPDDKFDPNALPIVKGVTMKNVWGVKVLQAGLIQGVKNSPFTDICLYDINLGGVTGPRTPPWKCSDVSGFAHQVSPWPCSELSSNHQGSCANYS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01027 442 Gene3D - 20 419 IPR012334 -
Phco3g01027 442 Pfam Glycosyl hydrolases family 28 135 416 IPR000743 GO:0004650|GO:0005975
Phco3g01027 442 SMART pbh1 233 265 IPR006626 -
Phco3g01027 442 SMART pbh1 323 344 IPR006626 -
Phco3g01027 442 SMART pbh1 294 315 IPR006626 -
Phco3g01027 442 SMART pbh1 267 288 IPR006626 -
Phco3g01027 442 SMART pbh1 206 232 IPR006626 -
Phco3g01027 442 PANTHER PECTIN LYASE-RELATED 29 435 - -
Phco3g01027 442 SUPERFAMILY Pectin lyase-like 34 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01027 Phco-Chr3 8663410 8667663 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02198 11 19536240 19542197 Phco3g01027 3 8663410 8667663 PCT