Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02198 ATGCCATCACTCTTCTATGAGCAAACTGCCATCAAAACAAAGATGCTTCTCTCTCCTTTTCTCACACTCACTATCCTTCTCTTCTTCTCTTCTTCATCTGTCTCTGCGATCTATTCAATACCAACATGTTCCAATATAGTGCCGTTCAAAAATCGCACCGACAGAATCTCCATAACTGACTATGGAGGTGTTGGCGACGGCCGCACTCTGAACACGAAAGCGTTCAGAGAAGCTGTGTACCGCATTGAGCATCTGAAAAGGCCAGGAGGCACGGTGCTCTACGTTCCTCAGGGAGTTTACTTGACGGAGAGCTTCAACCTCACTAGTCACATGACGCTTTATTTGGCTGCCGGTGCCGTTATCAAAGCCCAACAGGAATCAAGGAATTGGCCTTTAATTGCACCCTTACCATCTTATGGAAGAGGGAGGGAGCTCCCTGGAGGAAGGTATATCAGTTTTATCCATGGAGATGGACTTACTGATGTGGTGATCACAGGTGAGAATGGGACAATTGATGGACAAGGAGATATGTGGTGGAACATGTGGAGGAAGAGAACACTTAAATATACAAGACCAAGTCTTGTTGAATTTGTAAATTCTCAAGATATTATTATTTCAAATTTGATTTTCAAGAATTCTCCCTTCTGGAATATACATCCAATTTATTGCAACAATGTTGTGGTTAGATATGTCACAATTTTGGCTCCTCGTGACTCTCCCAACACTGATGGAGTTGATCCAGATTCAAGTTCAAATATGTGCATAGAGGACTCATACATATCAACAGGAGATGATCTTGTGGCAGTGAAGAGTGGATGGGATGAGTATGGTATTGCATACGGTCGCCCCAGCTCTGGCATCACCATCCGACGCCTGACTGGATCATCCCCGTTTGCCGGCATTGCAGTTGGCAGTGAAACCTCTGGTGGGGTGGAGAATGTGCTTGCTGAAAACATTAACCTCTTCAACATGGGAGTAGGTATCCACATCAAGACCAACAAAGGCAGGGGAGGGTTTATCAAGAACATCACAGTGGCTCATGTGTATGTGGAGAATGCAAGACAGGGAATAAAGATTGCAGGTGATGTAGGAGGGCACCCAGATGAGAAGTATAATCCTGATGCTCTCCCTGTTGTGAAAGGCATCACCATTAGGAATGTTTGGGGAGTGAAGGTTAACAGAGCTGGTTTGATAAATGGACTGAAAAATTCTCCTTTCACTGATGTTTGTTTGTCTGTTATCAACTTCCATGGTATGACAGGATCAAGTGCTCCCAATTGGAAGTGTTCTGATGTGTCTGGATTTGCTTATCAGGTTAGCCCTTGGCCATGTTCTCAGCTGCACAACCAAGAACCAGGATCCTGTGCCATTTAG 1374 0.4469 MPSLFYEQTAIKTKMLLSPFLTLTILLFFSSSSVSAIYSIPTCSNIVPFKNRTDRISITDYGGVGDGRTLNTKAFREAVYRIEHLKRPGGTVLYVPQGVYLTESFNLTSHMTLYLAAGAVIKAQQESRNWPLIAPLPSYGRGRELPGGRYISFIHGDGLTDVVITGENGTIDGQGDMWWNMWRKRTLKYTRPSLVEFVNSQDIIISNLIFKNSPFWNIHPIYCNNVVVRYVTILAPRDSPNTDGVDPDSSSNMCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRLTGSSPFAGIAVGSETSGGVENVLAENINLFNMGVGIHIKTNKGRGGFIKNITVAHVYVENARQGIKIAGDVGGHPDEKYNPDALPVVKGITIRNVWGVKVNRAGLINGLKNSPFTDVCLSVINFHGMTGSSAPNWKCSDVSGFAYQVSPWPCSQLHNQEPGSCAI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02198 457 PANTHER PECTIN LYASE-RELATED 25 451 - -
Phco11g02198 457 Gene3D - 40 440 IPR012334 -
Phco11g02198 457 Pfam Glycosyl hydrolases family 28 152 433 IPR000743 GO:0004650|GO:0005975
Phco11g02198 457 SMART pbh1 374 394 IPR006626 -
Phco11g02198 457 SMART pbh1 284 305 IPR006626 -
Phco11g02198 457 SMART pbh1 311 332 IPR006626 -
Phco11g02198 457 SMART pbh1 223 249 IPR006626 -
Phco11g02198 457 SMART pbh1 250 282 IPR006626 -
Phco11g02198 457 SMART pbh1 340 361 IPR006626 -
Phco11g02198 457 SUPERFAMILY Pectin lyase-like 49 448 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02198 Phco-Chr11 19536240 19542197 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02198 11 19536240 19542197 Phco11g02198 11 19536240 19542197 ECH
Phco11g02198 11 19536240 19542197 Phco3g01027 3 8663410 8667663 PCT