Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00798 ATGAAATGGCGGAACGAGCGGAGCCCGAGCATATTCGGAATGGGAGAAACTAACGATTGTGGAGAGGGAATTGATCGATTGATTCCAATAGTTGAAAACATGGGAGATCATTTGGCTAGGGCCCAGGATTTCGAGGGCAAGGCAGAGAAGAAGCTCAGCGGTTGGGGTTTGTTTGGCTCCAAATTCGAGGACGCTGCTGATCTCTTCGACAAATCCGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTGGCGAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGACGCTGCGCATTGCTATAAAAAATCTAACATAAATGAGGCTGTATCTTGCTTAGACAATGCTGTAAATATTTTTTGTGAGATTGGAAGACTCTCCATGGCAGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCTGAACAAAATATCGAACAGGCAGTAGTTTACTTTGAAAAAGCGGCTGATTTTTATGAAAATGAAGATGTGAACACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAATACTCTGCCCAGCTAGAACAATATCAGAGGTCAATTGAGATTTATGAAGAGATTGCTCGCCAGTCTCTAAACAATAATTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTCTGTAGAGGGGATGTTATTGCTATTAGCAATGCATTGGAGCGATATCAGGATTTAGATCCAACATTTTCAGGAACACGTGAATATAGACTACTTGCAGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGGAAGTTTACTGAAGTTATAAAAGAATTTGATAGTATGACCCCTCTGGATTCTTGGAAGACAACACTTCTATTGAGGGTGAAGGAGAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 969 0.4128 MKWRNERSPSIFGMGETNDCGEGIDRLIPIVENMGDHLARAQDFEGKAEKKLSGWGLFGSKFEDAADLFDKSANSFKLAKSWDKAGSTYIKLANCHLKLESKHEAAQAYVDAAHCYKKSNINEAVSCLDNAVNIFCEIGRLSMAARYLKEIAELYESEQNIEQAVVYFEKAADFYENEDVNTSANQCKQKVAQYSAQLEQYQRSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCRGDVIAISNALERYQDLDPTFSGTREYRLLADIAAAIDEEDVGKFTEVIKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00798 322 FunFam Alpha-soluble NSF attachment protein-like 39 318 - -
Phco3g00798 322 PRINTS NSF attachment protein signature 185 208 IPR000744 GO:0006886
Phco3g00798 322 PRINTS NSF attachment protein signature 61 80 IPR000744 GO:0006886
Phco3g00798 322 PRINTS NSF attachment protein signature 124 141 IPR000744 GO:0006886
Phco3g00798 322 PRINTS NSF attachment protein signature 216 235 IPR000744 GO:0006886
Phco3g00798 322 PRINTS NSF attachment protein signature 257 277 IPR000744 GO:0006886
Phco3g00798 322 PRINTS NSF attachment protein signature 288 308 IPR000744 GO:0006886
Phco3g00798 322 SMART tpr_5 145 178 IPR019734 GO:0005515
Phco3g00798 322 SMART tpr_5 86 119 IPR019734 GO:0005515
Phco3g00798 322 Gene3D Tetratricopeptide repeat domain 39 321 IPR011990 GO:0005515
Phco3g00798 322 CDD SNAP 40 311 IPR000744 GO:0006886
Phco3g00798 322 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 41 312 IPR000744 GO:0006886
Phco3g00798 322 Pfam Soluble NSF attachment protein, SNAP 40 311 - -
Phco3g00798 322 SUPERFAMILY TPR-like 40 313 IPR011990 GO:0005515
Phco3g00798 322 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Phco3g00798 322 Coils Coil 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00798 Phco-Chr3 6596834 6599424 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02825 2 57585813 57588892 Phco3g00798 3 6596834 6599424 ECH
Phco3g00798 3 6596834 6599424 Phco3g00798 3 6596834 6599424 ECH
Phco2g02825 2 57585813 57588892 Phco3g00798 3 6596834 6599424 PCT