Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02825 ATGGCGGATCAGCTGTCGAAGGCTGAAGAATTCGAGAAGAAAGCTGAGAAGAAGCTAGCTGGCTGGGGCTTGTTTGGCTCCAAATACGAGGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCTGGAGCGACATACCTAAAGTTGGCAAATTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCAAGTTGATGCTGCACATTGCTACAAGAAAACTAATATAAATGAGGCTGTATCTTGCTTAGACCGTGCTGTAAATATTTTCTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTATATGAGTCTGAACAGAATATTGAGCAGGCTCTTTTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAGGTGACGACTACTGCTAACCAATGCAAACAAAAAGTTGCTCAATTTGCTGCTCAGTTAGAACAATATCAAAAGTCAATTGAGATTTACGAAGAGATAGCTCGTCAATCCCTCAACAGTAATTTATTGAAGTACGGTGTTAAAGGACACCTGCTGAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTGTTGCTATAACCAATGCATTAGAACGATATCAGGAATTAGATCCAACATTTTCGGGAACACGTGAATGCAGATTGTTGGCGGATATTGCTGCTGCTATTGATGAAGAAGATCTTGGGAAGTTTACTGATGTTGTGAAGGAATTTGATAGCATGACCCCACTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCGAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4161 MADQLSKAEEFEKKAEKKLAGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLKLANCHLKLESKHEAAQAQVDAAHCYKKTNINEAVSCLDRAVNIFCDIGRLSMAARYLKEIAELYESEQNIEQALFYYEKSADFFQNEEVTTTANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNSNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTRECRLLADIAAAIDEEDLGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02825 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Phco2g02825 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Phco2g02825 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Phco2g02825 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Phco2g02825 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Phco2g02825 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Phco2g02825 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Phco2g02825 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Phco2g02825 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Phco2g02825 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Phco2g02825 289 CDD SNAP 23 278 IPR000744 GO:0006886
Phco2g02825 289 Coils Coil 151 178 - -
Phco2g02825 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02825 Phco-Chr2 57585813 57588892 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02825 2 57585813 57588892 Phco3g00798 3 6596834 6599424 ECH
Phco2g02825 2 57585813 57588892 Phco2g02825 2 57585813 57588892 ECH
Phco2g02825 2 57585813 57588892 Phco3g00798 3 6596834 6599424 PCT