Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00788 ATGGAAGCTCTCAAGACCATTTTCTTGCCTCTTTTTCTTGTCTTAGCTTCAGCATTGTATTCAGCCAATGCCAAAATCCAGGAGCATCAGTTTGTTATTCAAGCAAAACCAGTGAAGAGGCTGTGCAGCACTCACAACACCATCACTGTGAATGGACAATTCCCTGGCCCAACATTGGAAGTCAACAATGGAGACACTTTAGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTCACCATTCACTGGCATGGTATTCGGCAGATGAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAGTGTCCCATTCGTCCTGGAGAGAGTTACACGTATCGTTTCACCATTCAAGGACAAGAAGGAACACTTTGGTGGCATGCTCATAGCTCATGGCTAAGAGCCACTGTTTATGGTGCTTTAATCATTCACCCCAGAGAGGGAGAGGCGTATCCTTTCCCTAAGCCAAAGCGCCAGACACCAATTCTTCTAGGGGAATGGTGGGACGCAAATCCGATCGATGTTCTGAGACAAGCCACACAAACAGGAGCAGCTCCGAATATTTCTGATGCATACACCATCAATGGCCAACCTGGCGATCTTTACAAGTGTTCTACCCAAGGTACCACCATTGTTCCAATAGATTCTGGCGAGACCAACCTCCTTCGTGTCATCAATGCTGCACTCAACCAACCCCTTTTCTTCACTGTGGCCAACCACAAACTCAAAGTGGTTGGAGCCGATGCTTCCTACCTTAAACCCTTCACCACCTCAGTCATCATGCTGGGTCCAGGCCAAACCACCGATGTTCTCATCCAAGGTGACCAACCACCCTCACGCTACTACATGGCCGCACGTGCCTACCAATCCGCACAAAACGCCCCTTTTGACAACACCACAACCACAGCCATTCTCAACTACAAATCTGCACCATGTCCTGCAAAGGGTGTCTCCGTCAAACCCCTTATGCCCTTTCTCCCAGCTTACAACGACACCAACACAGTCACTACCTTCAGTAAAAGCTTCAGAAGCCCCAGAAAAGTCGAAGTCCCTGCAGAAATCGATGACGACCTTTTCTTCACCATTGGCCTTGGACTCAACAATTGCCCACCAAATTTCAGCCCAAACCAATGCCAAGGTCCAAATGGAACGCGTTTCACTGCCAGCATGAACAACGTCTCTTTTGTCCTCCCCAACAACGTCTCCATCTTGCAGGCTCATCACCTTGGAGTGCAGGGAGTGTTCACCACTGACTTTCCTACACAGCCTCCTTTGAAATTTGATTATACTGGTAATGTGAGTCGTTCACTGTGGCAACCCGTTCCCGGGACTAAGGTGACCAAGTTGAAGTTTGGATCGCGGGTGCAGATTGTGTTGCAGGACACCAGCATTGTGACCCCTGAGAACCACCCGATTCACCTTCATGGGTATGATTTCTACATAGTCGCAGAAGGGTTTGGAAATTTTGACCCCAAGAAAGACACTTCTAAGTTCAACCTTGTTGATCCACCTATGAGGAACACCGTTGCAGTACCTGTGAATGGATGGGCAGTTATCCGATTTGTTGCTGACAACCCAGGAGCTTGGATTATGCATTGTCACTTGGATGTTCACATAGGGTGGGGTTTGGCCACTGTGCTCTTGGTGGATAATGGAGTAGGGCTGTTGCAGTCCATAGAGGCCCCTCCAGAGGACCTACCTCTGTGTTAG 1710 0.486 MEALKTIFLPLFLVLASALYSANAKIQEHQFVIQAKPVKRLCSTHNTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPREGEAYPFPKPKRQTPILLGEWWDANPIDVLRQATQTGAAPNISDAYTINGQPGDLYKCSTQGTTIVPIDSGETNLLRVINAALNQPLFFTVANHKLKVVGADASYLKPFTTSVIMLGPGQTTDVLIQGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILNYKSAPCPAKGVSVKPLMPFLPAYNDTNTVTTFSKSFRSPRKVEVPAEIDDDLFFTIGLGLNNCPPNFSPNQCQGPNGTRFTASMNNVSFVLPNNVSILQAHHLGVQGVFTTDFPTQPPLKFDYTGNVSRSLWQPVPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGVGLLQSIEAPPEDLPLC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00788 569 FunFam Laccase 157 348 - -
Phco3g00788 569 NCBIfam laccase 24 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Phco3g00788 569 CDD CuRO_3_LCC_plant 414 552 IPR034289 GO:0005507
Phco3g00788 569 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Phco3g00788 569 ProSitePatterns Multicopper oxidases signature 1. 527 547 IPR033138 -
Phco3g00788 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Phco3g00788 569 FunFam Laccase 15 145 - -
Phco3g00788 569 PANTHER MULTI-COPPER OXIDASE 30 554 IPR045087 -
Phco3g00788 569 Gene3D - 373 569 IPR008972 -
Phco3g00788 569 SUPERFAMILY Cupredoxins 350 569 IPR008972 -
Phco3g00788 569 SUPERFAMILY Cupredoxins 23 172 IPR008972 -
Phco3g00788 569 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Phco3g00788 569 Gene3D - 157 347 IPR008972 -
Phco3g00788 569 SUPERFAMILY Cupredoxins 153 345 IPR008972 -
Phco3g00788 569 Pfam Multicopper oxidase 159 309 IPR001117 -
Phco3g00788 569 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Phco3g00788 569 Gene3D - 16 145 IPR008972 -
Phco3g00788 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00788 Phco-Chr3 6538156 6541245 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02815 2 57506203 57509500 Phco3g00788 3 6538156 6541245 PCT