Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00718 ATGCACCATGCAATGCATGAGGTGGTGACACGTGTCTTAGTGCAGGCGCGAGTTCAACGTGATACTTGGCCTGTCTCGACAATAGCACCGCCCAGGAGCAAGCGCAGTGAAGGACCACGTAGAATTGGGATTATAAATCCGCACCATACTCCTTACCCTATCACACTCACTCACTCACAACTCACAGGAATCCGAGGCAAGAAGAAGGAAAAAAACATGGAGGGGAAGGAGCAGGATGTGTCGTTGGGAGCAAACAAGTTCTCCGAGAGACAACCGATTGGTACGGCGGCACAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCACCGCCGGCACCGCTGTTTGAGCCCTCGGAGCTTACGTCATGGTCGTTCTACAGAGCAGGGATAGCAGAGTTTGTAGCAACTTTTCTGTTTCTCTACATCACCATCTTAACCGTCATGGGTGTCCTCAGGTCCCCTACTAAGTGCCAATCCGTCGGTATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGAATCTCAGGGGGTCACATAAACCCTGCGGTTACGTTTGGGCTGTTCTTGGCAAGGAAATTGTCGTTGACCAGAGCGTTGTTCTACATAGTGATGCAAGTGTTGGGTGCCATCGCTGGCGCTGGAGTGGTGAAGGGTTTCGAGGGAAAAACCAGATACGGTGCATTGAAAGGTGGTGCTAACTTTGTTGCCCCTGGTTACACAAAAGGTGACGGACTTGGTGCTGAAATTGTTGGCACCTTTGTCCTTGTTTACACCGTTTTCTCAGCCACCGATGCCAAACGTAGCGCAAGAGACTCTCACGTCCCCATTCTGGCACCTTTACCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGTATCAACCCTGCTCGTAGTCTCGGTGCCGCCATCATCTTCAACAAAGACCTTGGCTGGGACGATCACTGGATCTTCTGGGTGGGACCATTCATCGGCGCGGCTCTCGCTGCTCTCTACCACCAGGTCGTAATCCGCGCCATTCCCTTCAAGTCCAAGTGA 1086 0.5313 MHHAMHEVVTRVLVQARVQRDTWPVSTIAPPRSKRSEGPRRIGIINPHHTPYPITLTHSQLTGIRGKKKEKNMEGKEQDVSLGANKFSERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVLRSPTKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQVLGAIAGAGVVKGFEGKTRYGALKGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00718 361 Gene3D Glycerol uptake facilitator protein. 112 360 IPR023271 -
Phco3g00718 361 MobiDBLite consensus disorder prediction 26 49 - -
Phco3g00718 361 CDD MIP 127 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 MobiDBLite consensus disorder prediction 63 77 - -
Phco3g00718 361 FunFam Probable aquaporin PIP1-2 112 361 - -
Phco3g00718 361 SUPERFAMILY Aquaporin-like 119 354 IPR023271 -
Phco3g00718 361 Pfam Major intrinsic protein 119 349 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 NCBIfam MIP family channel protein 131 349 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 169 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 292 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 206 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 332 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 PRINTS Major intrinsic protein family signature 256 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco3g00718 361 MobiDBLite consensus disorder prediction 61 111 - -
Phco3g00718 361 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 84 357 IPR034294 -
Phco3g00718 361 ProSitePatterns MIP family signature. 187 195 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00718 Phco-Chr3 5894022 5895677 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00718 3 5894022 5895677 Phco3g00718 3 5894022 5895677 ECH
Phco2g02755 2 57017799 57018968 Phco3g00718 3 5894022 5895677 PCT