Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00709 ATGGAGGATCGGGACGCCAGCCGGATGGCGACTGCTACTAAGTTGTCGGATGTGGTGCTGGACTGTGTGATGCCGTACATCCACGACCCCAAGGACCGGGACGCGGTGTCGCAGGTGTGTCACCGGTGGTACGAGCTCGACTCGCTCACGCGGAAGCACGTTACGATTGCGCTCTGCTACACCACCACACCAGACCGGCTCCGGAGGCGGTTCCCGCACCTAGAGTCCCTGAACCTGAAGGGGAAGCCCCGGGCAGCAATGTTCAACCTCATACCAGAGGATTGGGGAGGTTTCGTTACACCGTGGGTTAAGGAGATCTCTCAGTACTTTGATTGCTTGAAGTCACTTCACTTTCGCCGCATGATTGTGACGGATTCCGATCTTCAGGTTCTTGCTTGCTCACGCGGTCACGTACTTCAGGCGCTCAAGCTCGATAAGTGCTCTGGATTCTCCACCGATGGCCTTTATTATATTGGTCGCTTTTGCAGGAATTTGAGAATCTTGTTTTTAGAGGAAAGCTCGCTTGTTGAGAATGATGGTGACTGGCTCCATCAGCTTGCTTTGAATAATACAGTTCTAGAGACACTAAATTTTTACTTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCCAACTTAAGCTCAGTGAAAATTACTGATTGTGAAGTATTGGATTTGGTGAACTTCTTTCGACATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCACTGTACGTTAATCCAGAGGTGCCCCAACTTGGAAGTACTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAAGCTTAAAAGGCTTCGGATTGAAAGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCACAAAGAGGACTAATTGCTTTGTCTCATGGCTGTCCCGAGCTTGAATATTTGGCCGTTTATGTATCCGACATTTCAAATGCATCATTAGAACACATTGGTACTCACTTGAAAAACCTCTGTGATTTTCGCCTTGTCTTGCTAGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACGACGGAGTGAGGGCTTTACTGAGGGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGATTGGGTTACATAGGACAATACAGCCCCAACGTGAGATGGATGCTTCTAGGGTATGTGGGAGAGACTGATGAAGGGCTTTTGAAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAGCTGGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTGAGATACCTATGGGTTCAAGGGTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGCCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTGATTGTTAACAATCAACAGGAAGAGCCTGTAGTTGTTGAGCATCCGGCGCATATTCTTGCTTATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATACTGCAACATATGTTGACACGTAA 1782 0.4652 MEDRDASRMATATKLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLNLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQVLACSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILFLEESSLVENDGDWLHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLSSVKITDCEVLDLVNFFRHASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDISNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDDGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLKFSKGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVIVNNQQEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDTATYVDT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00709 593 SUPERFAMILY RNI-like 290 531 - -
Phco3g00709 593 FunFam F-box/LRR-repeat protein 4 12 51 - -
Phco3g00709 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 248 - -
Phco3g00709 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Phco3g00709 593 Pfam F-box 13 53 IPR041567 -
Phco3g00709 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Phco3g00709 593 CDD F-box_AtTIR1-like 14 51 - -
Phco3g00709 593 SMART LRR_CC_2 483 507 IPR006553 -
Phco3g00709 593 SMART LRR_CC_2 218 237 IPR006553 -
Phco3g00709 593 SMART LRR_CC_2 373 397 IPR006553 -
Phco3g00709 593 SMART LRR_CC_2 136 161 IPR006553 -
Phco3g00709 593 SMART LRR_CC_2 313 336 IPR006553 -
Phco3g00709 593 SMART LRR_CC_2 431 457 IPR006553 -
Phco3g00709 593 FunFam Coronatine-insensitive protein 1 52 588 - -
Phco3g00709 593 Gene3D - 1 51 - -
Phco3g00709 593 SUPERFAMILY RNI-like 90 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00709 Phco-Chr3 5781144 5785812 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00709 3 5781144 5785812 Phco3g00709 3 5781144 5785812 ECH
Phco2g02745 2 56933614 56937631 Phco3g00709 3 5781144 5785812 PCT