Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00660 ATGGAGGGCGCGGTGGATCCTTCTCGAAGCTTCATGAAGGACGTGAAGCGTGTAATCATCAAGGTTGGCACCGCGGTGGTTACTCGCGAAGAAGGAAGGTTAGCGGTTGGAAGATTAGGAGCTTTGTGCGAGCAGATTAAGCAACTCAACTCTCTCGGATACGACATTATACTCGTCTCTTCTGGTGCCGTTGGTATTGGCCGCCAAAGACTGCGTTTCCGCAAATTAATCCACAGCAGCTTTGCCGACCTTCAGAAACCCCAACTCGAACTCGACGGCAAGGCCTGCGCCGCCGTTGGACAGAACAGTCTCATGGCTCTCTACGATACACTGTTCACTCAGCTCGATGTGACATCGGCTCAGCTTCTTGTGACGGATAACGATTTTCGAGATAAGGATTTCAGGAAGCAGCTTACCGAGACTGTGGAATCGCTGTTGGCGCTGAAGGTTATTCCGGTGTTCAATGAGAACGATGCTGTCAGTACTAGGAAGGCTCCGTATGAGGATTCTTCTGGTATATTTTGGGATAATGATAGTTTATCTGCTTTATTAGCCTTGGAGTTAAGAGCCGATCTCCTTGTTTTGTTGAGTGATGTAGAAGGCCTTTATAGTGGCCCTCCAAGTGACCCACATTCAAAGCTTATTTATACATATAACAAGGAAAAACATCAGAATGAAATTACTTTTGGTGACAAGTCTAGAGTAGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTGCAGTTCATGCAGCTGAAGCTGGCATTCCTGTTGTTATTACCAGTGGTTTTGCAGCTGAGAATATCATTAATGTTCTCCAAGGAAAACATATAGGAACTCTGTTCCATAAAGATGCACATGAGTGGGCCCAAGTAAAAGAAGTTGATGCACGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGGCCTTATCTTCAGAGGAAAGGAAACAAATTTTACTTAAAATAGCTGATGCCCTGGAAGCAAATGAAAAAATAATTAGGATTGAAAATGAAGCTGATGTTACTACTGCACAAGAAGCAGGATATGAAAAATCCTTAGTGGCTAGGCTAGCTTTAAAACCTGGGAAGATTGCAACTCTTGCAAACAACATGCGAATTATTGCCAATATGGAAGATCCAATTGGGCGAGTATTAAAACGAACTGAGCTTTCAGATGGGCTAATTTTAGAAAAGACATCATCTCCTTTGGGAGTGCTCCTTATTGTTTTTGAGTCACGCCCTGATGCTCTTGTACAGATAGCTTCACTGGCAATCCGAAGTGGGAATGGGCTTCTCTTGAAAGGTGGCAAAGAAGCTAAGCGATCAAATGCAATTTTGCACAAAGTAATTATTGAAGCCATACCAGATAATGTTGGTGGAAAACTTATAGGACTTGTGACCTCAAGGGAAGAAATACCTGAGCTACTTAAGCTGGATGACGTAATTGATCTGGTAATTCCAAGAGGCAGCAACAAACTTGTTTCTCAGATCAAGAGTTCAACTAAAATTCCTGTTTTAGGTCATGCTGATGGAATTTGCCATGTCTATGTTGATAAGTCTGCTAATGTAGAGATGGCAAGGCGGATTGTACTGGATGCAAAAGTTGATTATCCGGCAGCCTGCAATGCCATGGAAACACTTCTTATCCACAAGGATTTGATAGAGAAAGGTTGGCTCAATGATATCATTCTTGACCTTCGAACTGAAGGCGTTATATTATATGGAGGACCTGTGGCAAGTTCTCTGTTAAATATTCCACAAGCACTTTCATTTCATCATGAGTACAGTTCCCTGGCTTGCACCGTTGAAATTGTGGATGACGTATATGCAGCTATTGATCATATAAATCTATATGGAAGTGCACATACTGATTCCATCGTTGCTGAAGATAACGAAGTAGCTAATGTGTTTCTACGCCAAGTAGACAGTGCTGCTGTTTTTCACAATGCAAGCACCAGATACAGTGATGGGGCACGATTTGGACTAGGCGCAGAGGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGGGATTGTTAACAACAAGATGGATACTAAAAGGAACGGGACATGTGGTAGATGGTGATAGAGGGATTGTCTACACCCACAAAGACCTTGCAACTTAA 2151 0.4333 MEGAVDPSRSFMKDVKRVIIKVGTAVVTREEGRLAVGRLGALCEQIKQLNSLGYDIILVSSGAVGIGRQRLRFRKLIHSSFADLQKPQLELDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVESLLALKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELRADLLVLLSDVEGLYSGPPSDPHSKLIYTYNKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVVITSGFAAENIINVLQGKHIGTLFHKDAHEWAQVKEVDAREMAVAARECSRRLQALSSEERKQILLKIADALEANEKIIRIENEADVTTAQEAGYEKSLVARLALKPGKIATLANNMRIIANMEDPIGRVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIIEAIPDNVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGICHVYVDKSANVEMARRIVLDAKVDYPAACNAMETLLIHKDLIEKGWLNDIILDLRTEGVILYGGPVASSLLNIPQALSFHHEYSSLACTVEIVDDVYAAIDHINLYGSAHTDSIVAEDNEVANVFLRQVDSAAVFHNASTRYSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGTGHVVDGDRGIVYTHKDLAT 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00660 716 Pfam Aldehyde dehydrogenase family 287 559 IPR015590 GO:0016491
Phco3g00660 716 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 513 659 IPR016163 GO:0016620
Phco3g00660 716 NCBIfam glutamate-5-semialdehyde dehydrogenase 303 690 IPR000965 GO:0004350|GO:0006561
Phco3g00660 716 Hamap Gamma-glutamyl phosphate reductase [proA]. 295 701 IPR000965 GO:0004350|GO:0006561
Phco3g00660 716 ProSitePatterns Gamma-glutamyl phosphate reductase signature. 608 629 IPR020593 GO:0004350|GO:0006561
Phco3g00660 716 PRINTS Glutamate 5-kinase family signature 97 125 IPR001057 GO:0005524|GO:0016301
Phco3g00660 716 PRINTS Glutamate 5-kinase family signature 137 158 IPR001057 GO:0005524|GO:0016301
Phco3g00660 716 PRINTS Glutamate 5-kinase family signature 235 255 IPR001057 GO:0005524|GO:0016301
Phco3g00660 716 PRINTS Glutamate 5-kinase family signature 176 203 IPR001057 GO:0005524|GO:0016301
Phco3g00660 716 PRINTS Glutamate 5-kinase family signature 53 67 IPR001057 GO:0005524|GO:0016301
Phco3g00660 716 NCBIfam glutamate 5-kinase 16 290 IPR005715 GO:0005737|GO:0006561
Phco3g00660 716 CDD ALDH_F18-19_ProA-GPR 297 697 IPR000965 GO:0004350|GO:0006561
Phco3g00660 716 FunFam Delta-1-pyrroline-5-carboxylate synthase 286 405 - -
Phco3g00660 716 FunFam Delta-1-pyrroline-5-carboxylate synthase 513 659 - -
Phco3g00660 716 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 5 715 - -
Phco3g00660 716 PIRSF P5C_synthetase 1 716 IPR005766 GO:0003824|GO:0006561
Phco3g00660 716 Hamap Glutamate 5-kinase [proB]. 16 285 IPR005715 GO:0005737|GO:0006561
Phco3g00660 716 SUPERFAMILY Carbamate kinase-like 16 281 IPR036393 -
Phco3g00660 716 Coils Coil 711 716 - -
Phco3g00660 716 Pfam Amino acid kinase family 16 261 IPR001048 -
Phco3g00660 716 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 304 699 IPR016162 GO:0016491
Phco3g00660 716 FunFam Delta-1-pyrroline-5-carboxylate synthase 5 288 - -
Phco3g00660 716 SUPERFAMILY ALDH-like 295 700 IPR016161 GO:0016491
Phco3g00660 716 ProSitePatterns Glutamate 5-kinase signature. 233 250 IPR019797 GO:0004349|GO:0006561
Phco3g00660 716 Gene3D - 6 290 IPR036393 -
Phco3g00660 716 NCBIfam delta l-pyrroline-5-carboxylate synthetase 9 714 IPR005766 GO:0003824|GO:0006561
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00660 Phco-Chr3 5320028 5327727 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02711 2 56650298 56659652 Phco3g00660 3 5320028 5327727 ECH
Phco3g00660 3 5320028 5327727 Phco3g00660 3 5320028 5327727 ECH
Phco2g02711 2 56650298 56659652 Phco3g00660 3 5320028 5327727 PCT