Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00646 ATGTTCCATGATTTCAATGTAACACACCAGCTCCATTTGTGCCCTAACACTCCCGATCTCGCTCTTGGGCTGTGCTTCATCTTGGCAAGTTCTATTGGTAAATGTCAGGCAGATCTGCTTGACAAAATGGGACATGTAAAGTTGCAAACGCAAACTGGTATCAATGCTATAGAAGAGGGAACTGGGCTGTGCAATGCTGGGTATCCCGACAAAATAACTGTGGCATGCATGATTAATGCCGAAATTGGTGCCGTTTTGGCTGTCATGAGAAGAAATGTTAGATGGGGAGTTCATTATATGTCGGATGATGATCACTTGGAGCACTCCCTTGTTCAGTCTCTGAAGTCACTAAGGAAGCAAATTTTTTCTTGGCAGAATCAGTGGCATGTCATAAGCCCTACCTTGTATCTCCAGCCTTTTCTGGATGTGATTCAATCAGATGAAACTGGTGCACCAATTACTGGTGTCGCTCTATCATCTGTTTACAAGATCTTAACATTGGATGTAATTGATCAAAATACTGTTAATGTTGGGGATGCCATGCACTTGGTAGTTGATGCTGTTACAAGTTGCAGGTTTGAGGTGACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATATTGCAAGTTCTTCTAGCATGTGTGAAAAGCAAAGCATCTATGATGCTGAGTAACCAACATATTTGCACCATAGTAAATACTTGTTTCCGTATAGTTCATCAAGCAGGAACCAAAAGTGAATTGTTGCAGCGGATAGCACGTTACACAATGCATGAACTTGTTCGGTGTATTTTTTCTCACCTTCAAGATATTGACAACACAGAACTTACATTGGTAAATGGCAGCACTGCTTTAAAGAAAGAGATTGGTGGGCTAAATAATGAGCATAATTCTGCAAATAGACAATTGGAGAATGGGAGCTTGACTTCTGCTAGTAATGGTCAATCCTTATCCACAGGCATTGCTTCTAGTACTGTGAGTGATGTGGCAGCCACTGTAGTGGATGAAGACATAGCTATTGCTAGCAGTGGCAAAGAGGCTGATCTGAATGAATTGCAGCTTATAAATGAACCATATGGGATTCCCTGCATGGTGGAAATATTTCACTTTTTGTGTTCTTTGTTGAACGTTGCTGAACATATGGGAATGAGTCCTCGATCAAACACTATAGCATTTGATGAAGATGTGCCTCTTTTTGCCTTAACTTTGATTAATTCAGCCATAGAGTTGGGAGGGCCTTCCTTTCACCGACACCCTAGATTGCTGAGCTTAATTCAGGATGAATTATTCCGCAATCTTATGCAATTTGGTTTGTCAATGAGTCCTCTTGTACTTTCAATGGTATGTAGCATTGTTCTAAATTTGTATCACCATCTTCGTACAGAACTCAAATTACAGCTAGAAGCATTTTTTTCTTGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGTGCTTCATATCAGCAACAGGAAGTTGTCATGGAGGCCCTTGTTGACTTTTGCAGGCAAAAAACATTCATGGTGGAGATGTATGCTAACTTTGACTGTGACCTAACTTGTAGTAATGTCTTTGAAGACATTGCTAATTTGTTGTCCAAAAGTGCTTTTCCTGTGAACAGTCCATTGACTTCCATGCATATTATTGCTTTGGATGGTCTTATTGCTGTTATGCAAGGAATGGCTGAAAGGATAGGCAATGGATCTTTAAGTTCAGAACAATCTCCTGTGAATCTTGAAGAGTATACTCCCTTCTGGCAGGAAAAGTGTGAAAATTTTTGTGATCCAAAAAATTGGGTTCCTTTTGTATGCCGGAGAAAGTACTTCAAGAAAAGATTGATGATTGGTGCTGATCATTTTAATCGTGATATTAAGAAAGGTCTTGAGTTTCTCCAAGGGTCACATCTTTTACCTGACAAACTTGATCCCCAAAGTGTTGCTTGCTTTCTCAGATACACTGCTGGGTTGGATAAGAATCTCATTGGTGATTTTCTAGGAAATCATGATGAATTCTGCATTGAGGTTCTTCATGAATTTGCTAGAACATTTGATTTCAAAGACATGATGTTAGATACTGCCCTACGCTTATTTTTGGAGACTTTCAGACTGCCTGGAGAATCACAGAAGATACAGAGGGTGCTTGAAGCTTTCTCGGAACGATATTATGAGCAGTCTGCACAGATCCTAGCCAATAAGGATGCTGCTCTGCTGTTATCATACTCAATTATAATGCTTAACACAGATCAGCACAATTCACAGGTCAAAAAGAAGATGACAGAAGAGGATTTTATCCGTAATAATAGGCGAATAAATGGTGGCAATGATCTACCTCGAGAGTTCCTGTCTGAACTTTACCATTCAATTTGTAAGAATGAGATTCGAACAACTCCTGAGCAAGGTTCTGGTTTCCCTGAAATGACCCCAAGTCGGTGGATTTATCTCAAGCACAAGTCAAAAAAATCTGCTCCATTCATCGTTTCTGATTCCAAAGCATACCTTGATTATGATATGTTTTCTATATTGTCTGGTCCAACCATTGCTGCCATTTCTGTTGTATTTGATAATGCTGAGAATGCAGAGGTATACCAAACATGTATCGATGGATTCATAGCTGTCGCAAAGATATCAGCTTACTATCATCTTGAAAATATACTGGATGATTTGGTTGTGTCACTTTGTAAGTTTGTTACTGTTTTTGATCCATTAGCTGTTGAGGAGTCAATGCTAGCCTTTGGAGACGACATGAAAGCAAGAATGGCAACTGAGACAGTTTTCACTATTGCGAATAGGTATGGTGATTTCATCCGCACAGGGTGGAGAAATATTCTTGATTGCATCTTAAAATTTCACAGGTTAGGGCTTCTTCCTGCTCGTATGGCCAGTGATGCAGCTGAAGAGTCGGAGCTTTCTACAGAAACTGAGGATGGGGGGAAGCGTAATACTAATACTTTATCTTTATCGCGTCTTCCATCTGTAAATACTCCAAAGAGATCCTCAGGATTGATGAGCAGGTTTAGTCAACTCTTATATCTTGGTGCTGAAGAACCAAAATCAGTTCCTACTGAAGAACAGGTTGTTGCTCAGCAGTGCACCCTTCAAACAATTGAGAAGTGTCACATTGACTGCATATTCTCTGAGAGTAAATTTTTGCAAGCTGAATCTCTATTGCAGCTTGCAAAAGCAATCACTAGTGCAGGAGTGAGACCTAAGAAAGGGAACAGCACATCTGAGGATGAAGATACTTCAGTTTTCTGCCTGGAGTTACTGGTAGCAATCACTCTGAATAACCGGGATAGAATTGAGCTTCTTTGGCAGGGTGTTTATGAGCATATTTCCAACATTGTTCAGTCAACTGTGATGCCTTGTGCATTGGTAGAGAAGGCTGTTTTTGGCCTTTTACGAATTTGTCATCGCCTACTTCCCTATAAAGAGAACATTACTGATGAACTTCTGAGGTCTCTGCAGCTTGTTCTGAAGCTTGATGCACGTGTTGCTGATGCATACTATGAGCAGATAACACAGGAAGTTAGTCACCTCATGAAGGCAAATGCCTCTCATATTAGATCTCATTTAGGATGGCGGACAATTACATCATTGCTTTCCATCACTGCTAGACATCTGGAAGCAGCTGAGGCTGGTTTTGACGCATTGTTGTTCATAATGTCAGATGGAGCCCACTTGCTTCCAGCTAATTATGTTCTCTGTGTAGATGCAGCGAGGCAGTTTGCTGAATCTCGTGTTGGACAGGTTGAACGGTCTGTAATGGCCCTTGATCTTATGTCAGGGTCTGTCAGTTGTTTAGAGAAGTGGACTAATGATGCTAAGCAAGCAACGAAAGAAGAGGAAGTGGCAAAGATGTTGCAGGATATTGGGGAAATGTGGTTGAGGCTCGTTCAGGGACTAAAAAAACTATGTCTGGACCAGAGAGAGGAGGTTAGAAACCATTCGTTGTTATCTTTACAAATTTGCTTGATAGGATCAATTGGGATAAATCTCCCACATAGCTTGTGGTTACAATGTTTTGATCAAGTGATCTTCTCTGTGCTTGATGACCTGATTGAAATTTCTCAAACACAATCTCAAAAGGACTACCGGAACATAGAAGGAACACTTGTTCTTGCTTTGAAGCTCTTGTGTAAAGTTTTCCTCCAGTTAATCCAATATCTATCAGAATTGCCAGACTTCAGCATATTATGGTTGGCTGTACTAAGTCGGTTAGAAACTTATATGAAGGTGAAATTTAGGGGAAGGAGAAGCGAGAAGCTTCACGAACTTGTGCCTGAGCTTCTGAAGAACACTTTGCTTGTTATGAAAACAGGCCAAGTACTAGTGCGGAGCAGTAGTGAAGATGGAAGTAGTTTATGGGAACTGACATGGCAGCATATAAATAATATTGCTCCGTCAATGCAATCTGAGGTGTTCCCGGAGCAAGATTCCGAGCTTTTGCAGCAAAAACAGACTGAAAAGGTCGAAGGTTTGGTATCTGATGAAAACAATTCTTTGTCTTCAAATGAAACAGAAGGTCAAGATGGTCCTGGTATTGGTTAA 4548 0.4052 MFHDFNVTHQLHLCPNTPDLALGLCFILASSIGKCQADLLDKMGHVKLQTQTGINAIEEGTGLCNAGYPDKITVACMINAEIGAVLAVMRRNVRWGVHYMSDDDHLEHSLVQSLKSLRKQIFSWQNQWHVISPTLYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIDQNTVNVGDAMHLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASMMLSNQHICTIVNTCFRIVHQAGTKSELLQRIARYTMHELVRCIFSHLQDIDNTELTLVNGSTALKKEIGGLNNEHNSANRQLENGSLTSASNGQSLSTGIASSTVSDVAATVVDEDIAIASSGKEADLNELQLINEPYGIPCMVEIFHFLCSLLNVAEHMGMSPRSNTIAFDEDVPLFALTLINSAIELGGPSFHRHPRLLSLIQDELFRNLMQFGLSMSPLVLSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVVMEALVDFCRQKTFMVEMYANFDCDLTCSNVFEDIANLLSKSAFPVNSPLTSMHIIALDGLIAVMQGMAERIGNGSLSSEQSPVNLEEYTPFWQEKCENFCDPKNWVPFVCRRKYFKKRLMIGADHFNRDIKKGLEFLQGSHLLPDKLDPQSVACFLRYTAGLDKNLIGDFLGNHDEFCIEVLHEFARTFDFKDMMLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSAQILANKDAALLLSYSIIMLNTDQHNSQVKKKMTEEDFIRNNRRINGGNDLPREFLSELYHSICKNEIRTTPEQGSGFPEMTPSRWIYLKHKSKKSAPFIVSDSKAYLDYDMFSILSGPTIAAISVVFDNAENAEVYQTCIDGFIAVAKISAYYHLENILDDLVVSLCKFVTVFDPLAVEESMLAFGDDMKARMATETVFTIANRYGDFIRTGWRNILDCILKFHRLGLLPARMASDAAEESELSTETEDGGKRNTNTLSLSRLPSVNTPKRSSGLMSRFSQLLYLGAEEPKSVPTEEQVVAQQCTLQTIEKCHIDCIFSESKFLQAESLLQLAKAITSAGVRPKKGNSTSEDEDTSVFCLELLVAITLNNRDRIELLWQGVYEHISNIVQSTVMPCALVEKAVFGLLRICHRLLPYKENITDELLRSLQLVLKLDARVADAYYEQITQEVSHLMKANASHIRSHLGWRTITSLLSITARHLEAAEAGFDALLFIMSDGAHLLPANYVLCVDAARQFAESRVGQVERSVMALDLMSGSVSCLEKWTNDAKQATKEEEVAKMLQDIGEMWLRLVQGLKKLCLDQREEVRNHSLLSLQICLIGSIGINLPHSLWLQCFDQVIFSVLDDLIEISQTQSQKDYRNIEGTLVLALKLLCKVFLQLIQYLSELPDFSILWLAVLSRLETYMKVKFRGRRSEKLHELVPELLKNTLLVMKTGQVLVRSSSEDGSSLWELTWQHINNIAPSMQSEVFPEQDSELLQQKQTEKVEGLVSDENNSLSSNETEGQDGPGIG 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00646 1515 CDD Sec7 610 793 IPR000904 GO:0005085|GO:0032012
Phco3g00646 1515 SUPERFAMILY ARM repeat 858 1391 IPR016024 -
Phco3g00646 1515 SUPERFAMILY Sec7 domain 607 794 IPR035999 GO:0005085|GO:0032012
Phco3g00646 1515 ProSiteProfiles SEC7 domain profile. 602 791 IPR000904 GO:0005085|GO:0032012
Phco3g00646 1515 MobiDBLite consensus disorder prediction 965 998 - -
Phco3g00646 1515 SMART sec7_5 606 793 IPR000904 GO:0005085|GO:0032012
Phco3g00646 1515 FunFam ARF guanine-nucleotide exchange factor GNOM-like 685 803 - -
Phco3g00646 1515 Gene3D - 603 685 - -
Phco3g00646 1515 Gene3D - 686 803 IPR023394 -
Phco3g00646 1515 FunFam ARF guanine-nucleotide exchange factor GNOM 603 685 - -
Phco3g00646 1515 MobiDBLite consensus disorder prediction 1475 1509 - -
Phco3g00646 1515 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 112 1479 - -
Phco3g00646 1515 Pfam Sec7 domain 610 793 IPR000904 GO:0005085|GO:0032012
Phco3g00646 1515 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 363 524 IPR032691 -
Phco3g00646 1515 MobiDBLite consensus disorder prediction 1475 1515 - -
Phco3g00646 1515 MobiDBLite consensus disorder prediction 976 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00646 Phco-Chr3 5234375 5241556 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00646 3 5234375 5241556 Phco2g02693 2 56537957 56544117 PCT