Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00629 ATGCCTTTTATTTCCAACATTCAGCGTCAAACCGATTTCAACCTCTTCGATTCCAACACTCCCATTGTCATAGACAATGGTGCCTCCTATTTCCGCATAGGTTGGGCGGGAGAGGCTGAACCTCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTAACCGGGGAAACTGTCACCATTGTGGGTGACCATGATCCCGCCTTACTGAAATACTTCGACTGCACTCGCTCTGGGCCACGTTCTGCATTTGACAGTAATGTTGTGTACCAGTTTGAAACGATGGAATATATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTGATCACCGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATTGCTTTTGGTGTTGATGTGGCATTCAGCTATAAATACAATCAACAACAAGGAGTCTGTGCTAAAGATGGTCTTGCTCTGTGTCCTGGATTCAACACAACCCATGTGATTCCGTTCGTAAACGGGGAGCCTGTGTATGAAGGATGCTGTCGTACTAATATTGGTGGATTCCATGTGACTAATCATTTGAAGCAACTCCTTTCACTTAAATATCCGTATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACCAGATTATGCCTCGGAAGCTAGGTTGTTTCAGAAAGAACCCGAGCAAGCTGAAGGAAAAACCAGATGTTGGGAACTCCCTTGGGTTCCACCCCCAACTGATGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCCGAGGCAAAGAGGTCTTCTAAAATTAATGAACTGGAAAATGAATTGCATGGTTTAGAGTTTCTTTTGCATCAGCTTGAACAAGTGGAAGAGAGTGAGGTTCTACCATTCCTGTCAGAAACTGGCTATGTCAATAGGCAGGAGATAGAGTCTGCACGTAACAAAGTTATGCAATCATTACGGAAAGCAAAAGGTGAACCAAAGAATGAGCAAGCTGAAACTGAGAAGGAGGATCTTGGCACTAGTGAGAAGTATTCTCTTATAAACATTCCTGATGACATGTTAACTGAAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGTGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGACCTATATTTGGAGCAATTGCATGCTAGATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAATGGAGGCCATTCAAATGGAAATAGTTTGTCCGGTGGTATTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGGGAAAGAATGCGTCTCCTGACAACTGCAGCTTTTGACCGTGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATGGTAACGATGATGATGAAGAACCAGATGAAGATGAAACAGAGCTGACCCGCATCTCTTCTAGGCTACAGGACCTGGATCCAACATTTATACCTAAGTTAGATGCCAGTACCAGTCAACCTGCTGAGGTTCCACGGGTTCGTCCTCTTACCAAAGAAGATTTTAAGATTGTTATTGGGGTCGAAAGATTCAGATGTCCTGAAATATTGTTTAATCCAAACTGGATCGGGGTTGACCAGGTAGGATTAGATGAGATGGCTGGGGTCTCCATAAGGAGGTTACCATACAAGGATGAAACCTTGGAACAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTGAGGGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCAGCTACCTTCGCCTCAGACTCACAGTTCCATATGCAAACTTTCAGTAGACTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAGTTATCAACTGCGGTATACATTGTAA 2169 0.4334 MPFISNIQRQTDFNLFDSNTPIVIDNGASYFRIGWAGEAEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGVCAKDGLALCPGFNTTHVIPFVNGEPVYEGCCRTNIGGFHVTNHLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIAPDYASEARLFQKEPEQAEGKTRCWELPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVEESEVLPFLSETGYVNRQEIESARNKVMQSLRKAKGEPKNEQAETEKEDLGTSEKYSLINIPDDMLTEEQLNEKKKQLSLKSMADGRQRLKQKRYEEELERERKQQLEEEKRLENPDLYLEQLHARYKDLSERVDQQKRLKTNGGHSNGNSLSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYGNDDDEEPDEDETELTRISSRLQDLDPTFIPKLDASTSQPAEVPRVRPLTKEDFKIVIGVERFRCPEILFNPNWIGVDQVGLDEMAGVSIRRLPYKDETLEQRLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAATFASDSQFHMQTFSRLDYYEKGEDWLRSYQLRYTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00629 722 Gene3D - 588 677 - -
Phco3g00629 722 CDD NBD_sugar-kinase_HSP70_actin 22 201 - -
Phco3g00629 722 SMART actin_3 19 718 IPR004000 -
Phco3g00629 722 MobiDBLite consensus disorder prediction 467 486 - -
Phco3g00629 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Phco3g00629 722 SUPERFAMILY Actin-like ATPase domain 169 715 IPR043129 -
Phco3g00629 722 MobiDBLite consensus disorder prediction 357 384 - -
Phco3g00629 722 FunFam Actin-related protein 5 18 169 - -
Phco3g00629 722 Gene3D Actin; Chain A, domain 4 200 292 - -
Phco3g00629 722 Pfam Actin 587 714 IPR004000 -
Phco3g00629 722 Pfam Actin 17 267 IPR004000 -
Phco3g00629 722 MobiDBLite consensus disorder prediction 357 381 - -
Phco3g00629 722 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Phco3g00629 722 Coils Coil 308 328 - -
Phco3g00629 722 PANTHER ACTIN 21 710 IPR004000 -
Phco3g00629 722 Gene3D - 10 169 - -
Phco3g00629 722 Coils Coil 448 468 - -
Phco3g00629 722 FunFam Actin-related protein 5 202 256 - -
Phco3g00629 722 FunFam Putative actin-related protein 5 682 710 - -
Phco3g00629 722 Coils Coil 418 444 - -
Phco3g00629 722 MobiDBLite consensus disorder prediction 400 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00629 Phco-Chr3 5042065 5047846 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00629 3 5042065 5047846 Phco3g00629 3 5042065 5047846 ECH
Phco2g02667 2 56315100 56320609 Phco3g00629 3 5042065 5047846 PCT