Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00627 ATGGCTTCTGTCAAAAAACTCCTTGCCATTGTTTCCCTCATTACCGTTCTTCTCACCTCCGCCGAGGCCCGAATCCCGGGCGTGTACGGTGGCGGCGCGTGGGAGACCGCGCACGCTACGTTCTACGGGGGGAGCGACGCGTCAGGTACAATGGGAGGCGCGTGCGGGTATGGGAACCTGTACAGCCAGGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCAATAGCGGGCTGAGCTGCGGAGCGTGCTTCGAGATAAAGTGCGCGGACGACCCGAGCTGGTGCCATGCTGGCAGCCCCTCGATCTTGGTGACCGCCACGAACTTCTGCCCTCCGAACTACGCTCTCCCCAGCGACAATGGAGGATGGTGCAACCCTCCCAGGCCACACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCCGAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGCAGGGTGCCTTGTCGAAAGCAGGGAGGGATGAGGTTCACTATCAACGGCTTCCGTTACTTCAACCTGGTTTTGATCACCAACGTGGCGGGTGCAGGGGATATCGTGAGGACGAGCGTGAAAGGGACTAAGACTGGGTGGATGAGTATGAGCCGTAACTGGGGTCAGAATTGGCAGTCAAACGCTGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTGACAGCCAGTGACCGACGCACCTCCACCTCGTGGAATATTGTACCCGCCAATTGGCAATTTGGCCAAACCTTCACAGGCAAAAATTTCAGGGTCTGA 783 0.5913 MASVKKLLAIVSLITVLLTSAEARIPGVYGGGAWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCADDPSWCHAGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGTKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPANWQFGQTFTGKNFRV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00627 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Phco3g00627 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Phco3g00627 260 PANTHER EXPANSIN-A15 9 258 IPR002963 GO:0009664
Phco3g00627 260 FunFam Expansin 166 258 - -
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Phco3g00627 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Phco3g00627 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Phco3g00627 260 FunFam Expansin 23 162 - -
Phco3g00627 260 SUPERFAMILY Barwin-like endoglucanases 16 184 IPR036908 -
Phco3g00627 260 Gene3D - 22 162 IPR036908 -
Phco3g00627 260 SMART dpbb_1 69 156 IPR007112 -
Phco3g00627 260 Gene3D - 167 258 IPR036749 -
Phco3g00627 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Phco3g00627 260 CDD DPBB_EXPA_N 34 161 - -
Phco3g00627 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Phco3g00627 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Phco3g00627 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00627 Phco-Chr3 5023948 5025535 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02664 2 56278250 56279578 Phco3g00627 3 5023948 5025535 ECH
Phco3g02032 3 45773156 45775972 Phco3g00627 3 5023948 5025535 ECH
Phco3g00627 3 5023948 5025535 Phco3g00627 3 5023948 5025535 ECH
Phco2g02664 2 56278250 56279578 Phco3g00627 3 5023948 5025535 PCT