Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02664 ATGGCGATGCTCAACATCTTTGCCATTGTCTCCCTCTTGCCCTTTCTCACTCTATCCCAAGCAAAAATTCCCGGCGCCTATTCCGGTGGCCCATGGCAAACCGCTCATGCCACTTTCTACGGTGGCAGCGACGCCTCAGGCACTATGGGAGGGGCGTGTGGGTATGGGAACCTATACTCCCAAGGGTATGGTGTGAACACTGCGGCACTAAGCACTGCTCTGTTCAACAATGGATTCAGTTGTGGAGCGTGTTTCCAAATTAAATGCACCCATGACCCAAAATGGTGCCTCCCCGGTAACCCTTCCATCTTCGTCACTGCCACAAACTTCTGCCCTCCTAACTACGCTCTCCCCAGCGACAATGGCGGCTGGTGCAACCCTCCCAGACCGCACTTCGACCTCGCCATGCCAATGTTCCTTAAAATCGCACAATATCGTGCCGGCATCGTCCCCGTCTCTTACCGCCGGGTGGCTTGCAGGAAAGAAGGAGGGATGAGGTTCACGATGAACGGATTCCGTTACTTCAACTTGGTCTTGATCACCAACGTGGGGGGTGCAGGGGATATAGTGAGGGCGAGCGTGAAAGGGTCGAGGAGCGGGTGGATGAGCATGAGCCACAACTGGGGGCAGAACTGGCAATCAAACGCGGTTCTGGTTAGTCAGTCACTCTCCTTCAGGGTGACAGGCAGTGACCGACGCACCTCCACCTCTTGGAACATTGTCCCATCTAATTGGCAGTTCGGCCAAACCTTCTTGGGCAACAATTTCAGAATCTAG 777 0.5457 MAMLNIFAIVSLLPFLTLSQAKIPGAYSGGPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFQIKCTHDPKWCLPGNPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVACRKEGGMRFTMNGFRYFNLVLITNVGGAGDIVRASVKGSRSGWMSMSHNWGQNWQSNAVLVSQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFLGNNFRI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02664 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Phco2g02664 258 FunFam Expansin 164 256 - -
Phco2g02664 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Phco2g02664 258 FunFam Expansin 21 160 - -
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Phco2g02664 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Phco2g02664 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Phco2g02664 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Phco2g02664 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Phco2g02664 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Phco2g02664 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Phco2g02664 258 SMART dpbb_1 67 154 IPR007112 -
Phco2g02664 258 CDD DPBB_EXPA_N 31 159 - -
Phco2g02664 258 Gene3D - 165 256 IPR036749 -
Phco2g02664 258 Gene3D - 18 160 IPR036908 -
Phco2g02664 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Phco2g02664 258 PANTHER EXPANSIN-A15 18 255 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02664 Phco-Chr2 56278250 56279578 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02664 2 56278250 56279578 Phco3g00627 3 5023948 5025535 ECH
Phco3g02032 3 45773156 45775972 Phco2g02664 2 56278250 56279578 ECH
Phco2g02664 2 56278250 56279578 Phco2g02664 2 56278250 56279578 ECH
Phco2g02664 2 56278250 56279578 Phco3g00627 3 5023948 5025535 PCT