Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00626 ATGCAGAAGAAGAAGAACAACAACAACAACAACAACAATAACACTCTTCTCTGCGCTTCTATCAGTTCCTCTCATCTTGAGTCAATCGGTGGCATAATATTAAGCCTAGGTGAAACCGTAATGGCTCAATGCTCTAACAAGGATATTGACACAAGTGCATCTCAATTAAGTTGGTGGTATGTAGATATATCTTATCAAGAACTCAAAAAGGGAAGTTACAAAGTGAAAAGCTTGGATGAAACTTTCATTTGTCCATACTGTCCTGAGAGAAAACAGGATTATAAGTATAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGGAGTAGTTCAGAAAAGAGAACTGCAAAAGAGAAGGCCAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTTCTTATCTGGATAGCCCATCAAAACCTGCAGATAAAGGTGTCAAATCATTTAGCCCAGGAGAAACAGTAATGTCTCAGTGCTCTAACAAGGATACTGATACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTACGAAGAACTTAAGAAGGGAAGTTATAATGTGAAAACCTCAGATGTGACTTTCATCTGTCCCTACTGCCCTAGGAGAAAACAAGATTATTTGTACAGGGAACTCCTAGAGCATGCGTATATGGTGGGTCGGAGTAGTTCTGAAAAGAGAAGTGCCAGAGAGAGAGCCAATCATCTTGCATTAGTGAAATATTTGGAAAATGATCTTATTATTATGGATGGCCTGTCAGAACCTGTTGATAAAGGTACCAAATTAAGCTTAGGACAACCTGAAATAGCTCAATGCTCTAACAAGGAGACTGGTATGAGTGCATCTCCTCCAATAAACTGGTGGTATGTAGATAAGTTTTACAAAGAACTCAAAAAGGGAAATCACATTGTCCAAACCTCAGAAGAGAATTTTTCTTGTCCATACTGCCCTAAAAAGAGAAAACAGGATTATGTGTACAGGGAACTTCTTGACCATGCTTCTGGGGTGGGTCAGAGTAGTTCGCAAAAGAGAAGTGTCAGAGAGAGGGCTACTCATCTGGCCTTAATGAAATATTTGAAAAATGATCTCATGCATATGAATGATCCATCAAAATCTGTAAATGAAGGTAACCCCCCAGTTACCATAGTGAATCAGAGTAGTTCAAAAGAAAGAAGTGTCAGAGAAGATGCTACTCATCTGGCTTTAGGGAAAGACTTGAAAAGGGATCTCACAAATGTGAGTGGTTCATCATCAAAACCTGTAAATAAAGGAACCATAATAATAAGCCCTGGAGAAACGGCAATTGGTTGCTGCTCTGACAAAGATAGCAACATGAGTTCATCTCAGATTGGGTGGTATGTAGATAAATTTTATGAAGAACTCAAAAAGGGGAGACACTGTGTGAAAACCTCGGATGAGACTTTCACATGCCCATACTGCCCTAATAAAAAGATAAATCGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGATCACAAAAAAGAAGTTTCTTTGAAAGGGCTAATCATCTGGCTTTAGAAAAATATTTGAAAAAGGATGTTATGAATGTGGGTGCTTCATTTCCATCAAAACCTATGGATCAAGGCACAACAACATCAACTCCAGGAGAAACTCTAACGGGTGACTCTCATAAAGATAATAATATACGGGCAACTCAAATAAGTAGGTGGTATGTACATAAATCCTATGAAGCACTCAAAAAGGGAAATCAGATTGTGAAAACCTCTGAAATGACTTTCTCGTGTCCATACTGCCCTAATAAAAAGAGAAAGAGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTACCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATCTGGCTTTAATGAAATATTTGGTAAAGGATCTTATGAATGTGGATGGTCCACCAAAAACTGTGGATGAAGGCAATGCTCTTTTTGAGGAGCAGTTTGTGTGGCCATGGGCTGGGATATTGGTTAATATTCCTACTAGACAGATAGAAGATGGACGTTGTGTTGGGGAAAGTGGTTCCAAGCTAAGGGATGAACACCGAAGCAGGGGATTTAATCCTTGTAGAGTCCGCACTTTTTCAGATGGTCACTCTGGAACTGCAGTTATGGAATTCAATAAAGATTGGACGGGCTTAGATAATGCTTTGGCATTTGAGAGAGCATATGAATTAGATCATCACGGGAAAAGGGACTGGTTTGCTAATACTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGAGCTGATGACTACAAGATGAACAATATCATTGGGAAACAACTGCAGAAGATGGGGGATATCCAAACAATATCTGAGCTCATGAAAGAAGAAGCTCGAATACATGATAAACTTGTCTCCTGCTTGAATAATACTATTCAGGTCAAGAAGAAGCGGTTAATGGAGATGGAAGAAAAATACAATGAGACTTCACATCACATGGAAATTGTAATGGGAGAAATAGATAAGCTCACTCAAGATCACAAACAAGAGATGAAGAAAATACAGTCAAGTGCAACTCAGCACTTCCAGAATATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAGTTTGAGTTGCGGAGAATTGAATTGGAAAAACGGGAAGCACATAATGAAAGCGAAAGAAAGAAGTTGGAAGAAGAGATTATGGAGAATGCATTGAAAAATAGCGCTTTGGAAATGGCTGTTCTGGAACAACAGAAAGCTGGTGAAAATGTTTGGAAACTGGCTGCAGATCAAAAGCGGCAAAAAGAAGATCTTCGTCATAAAATCATCAGGCTTGAAAAACAACTGGAAGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGCAATACATCGAAGATGATGGAGACTCAGAAGTTCTGAATAAGGTGGATATCTTACACAAGGATTTAAGAGAGAAGGAACAGTCACTACAAGACGTAGATGCCCTGAACCAAACACTAATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAGGAAGCTCGAAAAAATTTGATTAAGGCCATTAAAGAGATATCTTGCCGTGCTAGTGTTGGTGTGAAGAGAATGGGGGAGCTTGATATTAGACCATTCCTTGAAGCTATGAAGAAAAAATACAATGATGAGGATGCAGAAGATAGAGCTACAGAACTGTGTTCATTGTGGCAAGAGTATATAAAGGACCCAGACTGGCATCCATTTAAAATTACCATAATTGAAGGGAAAGAACAGGAAATCATAGACAATGAAGATGAAAAGTTGAAAGCACTGCAAAATGAGTTGGGTGAAGGAGTCTACCAAGCTGTGGTGACAGCTGTGACAGAGATCAATACGTATAATCCAAGTGGGAGGTATACAACCTCTGAATTATGGAATTACGAAGAGGGAAAGAGAGCTACCTTGCAAGAAGGAGTAAAATTGTTATTGATGCAATGGAAACTATCTAAACAGAAAAGAGGGACTGCGTAA 3564 0.3906 MQKKKNNNNNNNNNTLLCASISSSHLESIGGIILSLGETVMAQCSNKDIDTSASQLSWWYVDISYQELKKGSYKVKSLDETFICPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALVKYLEKDLSYLDSPSKPADKGVKSFSPGETVMSQCSNKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKRSARERANHLALVKYLENDLIIMDGLSEPVDKGTKLSLGQPEIAQCSNKETGMSASPPINWWYVDKFYKELKKGNHIVQTSEENFSCPYCPKKRKQDYVYRELLDHASGVGQSSSQKRSVRERATHLALMKYLKNDLMHMNDPSKSVNEGNPPVTIVNQSSSKERSVREDATHLALGKDLKRDLTNVSGSSSKPVNKGTIIISPGETAIGCCSDKDSNMSSSQIGWYVDKFYEELKKGRHCVKTSDETFTCPYCPNKKINRDYVYREILEHASGVGQSRSQKRSFFERANHLALEKYLKKDVMNVGASFPSKPMDQGTTTSTPGETLTGDSHKDNNIRATQISRWYVHKSYEALKKGNQIVKTSEMTFSCPYCPNKKRKRDYVYREILEHASGVGQSTSQKRSATEKANHLALMKYLVKDLMNVDGPPKTVDEGNALFEEQFVWPWAGILVNIPTRQIEDGRCVGESGSKLRDEHRSRGFNPCRVRTFSDGHSGTAVMEFNKDWTGLDNALAFERAYELDHHGKRDWFANTEQKSGIYAWIARADDYKMNNIIGKQLQKMGDIQTISELMKEEARIHDKLVSCLNNTIQVKKKRLMEMEEKYNETSHHMEIVMGEIDKLTQDHKQEMKKIQSSATQHFQNIFNGHERLKLQLESQKREFELRRIELEKREAHNESERKKLEEEIMENALKNSALEMAVLEQQKAGENVWKLAADQKRQKEDLRHKIIRLEKQLEVKQKLELEIQQLKGKLNVMQYIEDDGDSEVLNKVDILHKDLREKEQSLQDVDALNQTLIIKERQSNDELQEARKNLIKAIKEISCRASVGVKRMGELDIRPFLEAMKKKYNDEDAEDRATELCSLWQEYIKDPDWHPFKITIIEGKEQEIIDNEDEKLKALQNELGEGVYQAVVTAVTEINTYNPSGRYTTSELWNYEEGKRATLQEGVKLLLMQWKLSKQKRGTA 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00626 1187 Pfam XH domain 1053 1183 IPR005379 -
Phco3g00626 1187 Coils Coil 808 828 - -
Phco3g00626 1187 CDD RRM_like_XS 669 774 IPR005380 GO:0031047
Phco3g00626 1187 MobiDBLite consensus disorder prediction 370 395 - -
Phco3g00626 1187 Pfam XS zinc finger domain 314 356 IPR005381 GO:0031047
Phco3g00626 1187 Pfam XS zinc finger domain 198 240 IPR005381 GO:0031047
Phco3g00626 1187 Pfam XS zinc finger domain 84 126 IPR005381 GO:0031047
Phco3g00626 1187 Pfam XS zinc finger domain 597 640 IPR005381 GO:0031047
Phco3g00626 1187 Pfam XS zinc finger domain 478 521 IPR005381 GO:0031047
Phco3g00626 1187 Gene3D XS domain 665 830 IPR038588 -
Phco3g00626 1187 Pfam XS domain 666 775 IPR005380 GO:0031047
Phco3g00626 1187 Coils Coil 1105 1125 - -
Phco3g00626 1187 PANTHER RIBONUCLEASE P SUBUNIT P38 558 1185 IPR045177 GO:0080188
Phco3g00626 1187 MobiDBLite consensus disorder prediction 139 162 - -
Phco3g00626 1187 Coils Coil 939 983 - -
Phco3g00626 1187 Coils Coil 876 929 - -
Phco3g00626 1187 MobiDBLite consensus disorder prediction 535 560 - -
Phco3g00626 1187 MobiDBLite consensus disorder prediction 370 389 - -
Phco3g00626 1187 MobiDBLite consensus disorder prediction 538 560 - -
Phco3g00626 1187 Coils Coil 1020 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00626 Phco-Chr3 5013945 5022381 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00626 3 5013945 5022381 Phco3g00626 3 5013945 5022381 ECH
Phco2g02662 2 56262077 56269402 Phco3g00626 3 5013945 5022381 PCT