Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00604 ATGGAGGAGGCTCCCCCGGCAGAGGCGGTGGCCGTACGGCGAGCTTTGGAGCTGCTGCAGCTAAACGACCCCGTTTTGAGGGTCCAAGCGGCCAGGGACATCCGCCGCCTCACCAAAACCTCCCACCGCTGCCGCCGCCACCTCCGCCAGGCCGTCTCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGACTTCCACGAACCCGCGCTTCTCGCTCTCCTCAACCTTGCCGTACAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTGGAGCCAATAATCAGTTTCCTCAAGTCAAAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTACTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATTAGTGCTTGTGGCGCCATTCCTCTCCTTGTAAATACTCTCAGAGATGGAAGCTCCCAAGCTAAAGTTGATGCTGTGATGGCTCTGTCCAATTTATCAACACACCCTGATAACCTCAGCATCATTCTCGAAACAAATGCAACGCCTTTTATAGTTAGTCTTCTCAAAACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGGTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGCAGAACTGCCTTAACATCTGAAGAGGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGTACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGACAATGTGTCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTTACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTTAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCAGACACTCTTCAGAACATAGTGTGTGACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACCCCTAGTGATATGCCTATGACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4796 MEEAPPAEAVAVRRALELLQLNDPVLRVQAARDIRRLTKTSHRCRRHLRQAVSPLVSMLRVDSPDFHEPALLALLNLAVQDEKNKINIVEAGALEPIISFLKSKNPNLREYATASLLTLSASPTNKPIISACGAIPLLVNTLRDGSSQAKVDAVMALSNLSTHPDNLSIILETNATPFIVSLLKTCRKSSKIAEKCSGLIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPMTSCASEVSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00604 366 FunFam U-box domain-containing protein 4 1 348 - -
Phco3g00604 366 Gene3D - 2 350 IPR011989 -
Phco3g00604 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Phco3g00604 366 SUPERFAMILY ARM repeat 13 307 IPR016024 -
Phco3g00604 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Phco3g00604 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Phco3g00604 366 SMART arm_5 206 247 IPR000225 GO:0005515
Phco3g00604 366 SMART arm_5 122 162 IPR000225 GO:0005515
Phco3g00604 366 SMART arm_5 40 79 IPR000225 GO:0005515
Phco3g00604 366 SMART arm_5 81 121 IPR000225 GO:0005515
Phco3g00604 366 SMART arm_5 163 205 IPR000225 GO:0005515
Phco3g00604 366 PANTHER U BOX DOMAIN-CONTAINING 11 292 - -
Phco3g00604 366 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Phco3g00604 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00604 Phco-Chr3 4873982 4877193 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00604 3 4873982 4877193 Phco3g00604 3 4873982 4877193 ECH
Phco2g02653 2 56203998 56207509 Phco3g00604 3 4873982 4877193 PCT