Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00599 ATGGCTGATGATCCTCAAGACGTGGCTGACAGGGAGCGCATTTTCAAGCGTTTTGATGCGAACGGCGACGGCCAAATCTCTTCTGCTGAGCTCGGAGAAGCACTGAAGGCCCTTGGATCAGTAACAGCAGAAGAGGTGCAAAGGATGATGGAAGAGATTGACACTGATGGAGATGGCTACATTTCACACGAAGAGTTCACAGAATTTGCTAAAGCCAACCGTGGCCTAGTCAAAGATGTTGCAAAGATTTTTTAA 255 0.4745 MADDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVQRMMEEIDTDGDGYISHEEFTEFAKANRGLVKDVAKIF 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00599 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Phco3g00599 84 SMART efh_1 10 38 IPR002048 GO:0005509
Phco3g00599 84 SMART efh_1 45 73 IPR002048 GO:0005509
Phco3g00599 84 Gene3D - 2 84 - -
Phco3g00599 84 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 12 69 - -
Phco3g00599 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Phco3g00599 84 FunFam Calmodulin-2 A 3 81 - -
Phco3g00599 84 CDD EFh 12 71 IPR002048 GO:0005509
Phco3g00599 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Phco3g00599 84 SUPERFAMILY EF-hand 9 70 IPR011992 -
Phco3g00599 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Phco3g00599 84 PRINTS Recoverin family signature 14 35 - -
Phco3g00599 84 PRINTS Recoverin family signature 59 77 - -
Phco3g00599 84 Pfam EF-hand domain pair 13 70 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00599 Phco-Chr3 4837975 4838229 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02647 2 56159340 56161446 Phco3g00599 3 4837975 4838229 PCT