Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00561 ATGGCTCTGTGTTCCTCTGTTTCACTCTTTCCACTTCTCTTTTCGCTGTTGTTGTTGTTGTTCTCCGCTTCCTCCTCCGCCAACCATGATTCAGTCTCGTTCTCTTTCCCTCTCAGGTCGCTTCCCCTCTCCGCACAGAAGCCTCCGAAGACGAACCCAAAACTGAGAAGCCTTTCCTCTGCCTCGTACAACGTAAAATTGTTGTTCAAGTACTCGATGGCTCTGGTGGTAACCCTCCCCATAGGGACTCCTCCGCAGCACCAACAAATGGTGTTGGACACGGGAAGCCAACTCTCGTGGATTCAGTGCCACAACAAAACCCCTCCCACTGCGTCGTTTGACCCTTCTCTCTCCTCATCCTTCTACGTCATCCCCTGCACCCACCCTCTCTGCAAACCCCGCGTTCCCGATTTTACCCTCCCCACAACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACCTACGCCGAGGGCAACCTCGTCCGAGAAAAACTAACCTTCTCCCCTTCCCAAACAACCCCTCCACTTACCCTCGGCTGCGCCACCGAGTCCAGCGACGCCAGAGGCATTCTCGGAATGAACCTCGGCCGCCTGTCCTTCCCCTCGCAGGCCCAAATCACCAAATTCTCGTACTGTGTCCCCACCCGAAAACCCCAACCCGGAAACCTCCCAACCGGGTCGTTCTACATCGGCAACAACCCCAACTCCGCGCGCTTCCGTTACGTCAACATGTTGACCTTTAGTCAAAGTCAACGCATGCCGAATTTGGACCCGTTGGCCTACACCGTGCCCATGCAGGGAATTAGAATTGGTGGCAAGAGGCTAAACATCAATCCTTCGGTTTTCCGCCCCGACGCTAGCGGGTCGGGTCAGACCATGATCGACTCCGGATCCGAATTCACCTTCCTGGTCGACCAGGCTTACGACAGGGTAAGGGAGGAGGTTGTTAGAGTTGTGGGGCCCAGGATTAAGAAGGGGTACGTGTACGGCGGAGTCGCGGACATGTGTTTCGACGATTCCGCGAGGGAGACAGTCGGACGGTTGATAGGGGACGTGGTGTTGGAGTTCGAGAAAGGCGTGGAGATCGTGGTTCCGAAGGAGAGGGTGCTGGCTGACGTGGGTGGTGGGGTCCACTGCGTGGGAATCGGCAGGTCGGAAAGATTGGGTGCAGCCAGCAACATCATTGGGAACATCCATCAGCAGAATGTGTGGGTAGAGTTCGATCTCGCTAATCACAGAGTCGGGTTCGGTGAGGCCGATTGTAGCAGATCGTAG 1293 0.5615 MALCSSVSLFPLLFSLLLLLFSASSSANHDSVSFSFPLRSLPLSAQKPPKTNPKLRSLSSASYNVKLLFKYSMALVVTLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLTLGCATESSDARGILGMNLGRLSFPSQAQITKFSYCVPTRKPQPGNLPTGSFYIGNNPNSARFRYVNMLTFSQSQRMPNLDPLAYTVPMQGIRIGGKRLNINPSVFRPDASGSGQTMIDSGSEFTFLVDQAYDRVREEVVRVVGPRIKKGYVYGGVADMCFDDSARETVGRLIGDVVLEFEKGVEIVVPKERVLADVGGGVHCVGIGRSERLGAASNIIGNIHQQNVWVEFDLANHRVGFGEADCSRS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00561 430 Gene3D Acid Proteases 234 430 IPR021109 -
Phco3g00561 430 ProSiteProfiles Peptidase family A1 domain profile. 75 423 IPR033121 -
Phco3g00561 430 Pfam Xylanase inhibitor N-terminal 76 229 IPR032861 -
Phco3g00561 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Phco3g00561 430 Pfam Xylanase inhibitor C-terminal 266 423 IPR032799 -
Phco3g00561 430 FunFam aspartic proteinase PCS1 237 430 - -
Phco3g00561 430 SUPERFAMILY Acid proteases 76 428 IPR021109 -
Phco3g00561 430 CDD pepsin_A_like_plant 76 427 IPR034161 -
Phco3g00561 430 Gene3D Acid Proteases 59 233 IPR021109 -
Phco3g00561 430 PRINTS Pepsin (A1) aspartic protease family signature 298 309 IPR001461 GO:0004190|GO:0006508
Phco3g00561 430 PRINTS Pepsin (A1) aspartic protease family signature 399 414 IPR001461 GO:0004190|GO:0006508
Phco3g00561 430 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Phco3g00561 430 PANTHER ASPARTYL PROTEASE-RELATED 14 428 IPR001461 GO:0004190|GO:0006508
Phco3g00561 430 FunFam Aspartyl protease family protein 55 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00561 Phco-Chr3 4454829 4456121 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00561 3 4454829 4456121 Phco3g00561 3 4454829 4456121 ECH
Phco2g02623 2 55929108 55931029 Phco3g00561 3 4454829 4456121 PCT